Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:111980458-112357068

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pbsq1 13 102000000 to 112000000 10000000 QTL percent broken sperm QTL 1
Tssr121088 13 111980626 to 111980655 29 + TSS region transcription start site region 121088
Tssr121089 13 111983026 to 111983059 33 + TSS region transcription start site region 121089
Tssr124042 13 111984049 to 111984060 11 - TSS region transcription start site region 124042
Tssr121090 13 111984278 to 111984288 10 + TSS region transcription start site region 121090
Gm15322 13 111991466 to 111995486 4020 + lincRNA gene predicted gene 15322
Tssr121091 13 112000031 to 112000043 12 + TSS region transcription start site region 121091
Gm15323 13 112001009 to 112012238 11229 + lincRNA gene predicted gene 15323
Tssr124043 13 112001187 to 112001195 8 - TSS region transcription start site region 124043
Tssr124044 13 112001240 to 112001252 12 - TSS region transcription start site region 124044
Tssr121092 13 112001415 to 112001426 11 + TSS region transcription start site region 121092
Tssr121093 13 112001434 to 112001443 9 + TSS region transcription start site region 121093
Tssr121094 13 112001901 to 112001924 23 + TSS region transcription start site region 121094
Gm41061 13 112038313 to 112041558 3245 - lncRNA gene predicted gene, 41061
Gm41062 13 112100504 to 112101699 1195 + lncRNA gene predicted gene, 41062
Cpgi6094 13 112100709 to 112101118 409 CpG island CpG island 6094
Tssr121095 13 112100916 to 112100944 28 + TSS region transcription start site region 121095
Gm31104 13 112138116 to 112139093 977 + pseudogene predicted gene, 31104
Gm48802 13 112165458 to 112172068 6610 - lincRNA gene predicted gene, 48802
Tssr124045 13 112172162 to 112172206 44 - TSS region transcription start site region 124045
Gm41063 13 112182285 to 112186031 3746 + lncRNA gene predicted gene, 41063
Tssr121096 13 112182503 to 112182517 14 + TSS region transcription start site region 121096
Gm33849 13 112186176 to 112191342 5166 + lncRNA gene predicted gene, 33849
Tssr121097 13 112188753 to 112188758 5 + TSS region transcription start site region 121097
Cpgi6095 13 112213677 to 112213960 283 CpG island CpG island 6095
Gm37427 13 112219193 to 112220481 1288 + unclassified gene predicted gene, 37427
Tssr121098 13 112263049 to 112263050 1 + TSS region transcription start site region 121098
Ankrd55 13 112288451 to 112384002 95551 + protein coding gene ankyrin repeat domain 55
Tssr121099 13 112288496 to 112288507 11 + TSS region transcription start site region 121099
Tssr121100 13 112288516 to 112288548 32 + TSS region transcription start site region 121100
Tssr121101 13 112288580 to 112288594 14 + TSS region transcription start site region 121101
Tssr121102 13 112288790 to 112288806 16 + TSS region transcription start site region 121102
Tssr124046 13 112289148 to 112289152 4 - TSS region transcription start site region 124046
Gm22768 13 112291121 to 112291273 152 + snRNA gene predicted gene, 22768
D13Mit53 13 112294423 to 112294569 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 53
Tailaq3 13 112294569 to 55572541 -56722028 QTL tail length adjusted QTL 3
Tailq3 13 112294569 to 55572541 -56722028 QTL tail length QTL 3
W6q16 13 112294569 to 55572541 -56722028 QTL weight 6 weeks QTL 16
Mol3 13 112294569 to 75984481 -36310088 QTL modifier of LPS-response 3
W10q17 13 112294569 to 55572541 -56722028 QTL weight 10 weeks QTL 17
Egaq4 13 112294569 to 87753866 -24540703 QTL early growth adjusted QTL 4
Tssr121103 13 112318389 to 112318405 16 + TSS region transcription start site region 121103
Tssr121104 13 112318416 to 112318437 21 + TSS region transcription start site region 121104
Tssr121105 13 112318447 to 112318458 11 + TSS region transcription start site region 121105
Tssr121106 13 112335929 to 112335942 13 + TSS region transcription start site region 121106
Tssr121107 13 112344739 to 112344745 6 + TSS region transcription start site region 121107
Tssr124047 13 112349221 to 112349246 25 - TSS region transcription start site region 124047
Gm41065 13 112351554 to 112355805 4251 - lncRNA gene predicted gene, 41065
Tssr124048 13 112354222 to 112354227 5 - TSS region transcription start site region 124048
Tssr124049 13 112354249 to 112354271 22 - TSS region transcription start site region 124049
Gm48837 13 112356925 to 112367845 10920 - antisense lncRNA gene predicted gene, 48837