Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:88145781-91125782

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Splwt1 12 41646392 to 90920752 49274360 QTL spleen weight 1
Gm18630 12 88153674 to 88156251 2577 + pseudogene predicted gene, 18630
Gm10436 12 88175589 to 88181894 6305 - protein coding gene predicted gene 10436
Gm18631 12 88220556 to 88222617 2061 + pseudogene predicted gene, 18631
Gm48553 12 88225537 to 88225944 407 - pseudogene predicted gene, 48553
Gm48560 12 88248544 to 88248705 161 - pseudogene predicted gene, 48560
Gm8332 12 88249666 to 88250100 434 - pseudogene predicted pseudogene 8332
Tssr117184 12 88252865 to 88252872 7 - TSS region transcription start site region 117184
Gm18618 12 88258913 to 88259385 472 - pseudogene predicted gene, 18618
Gm48561 12 88270365 to 88270614 249 - pseudogene predicted gene, 48561
Gm5662 12 88270640 to 88274500 3860 - protein coding gene predicted gene 5662
Gm21039 12 88280358 to 88282770 2412 - pseudogene predicted gene, 21039
Gm7104 12 88284538 to 88287069 2531 - pseudogene predicted gene 7104
Gm8634 12 88302813 to 88305189 2376 + pseudogene predicted gene 8634
Gm48564 12 88308040 to 88308447 407 - pseudogene predicted gene, 48564
Gm18619 12 88317528 to 88318674 1146 - pseudogene predicted gene, 18619
Gm5039 12 88320122 to 88321762 1640 - pseudogene predicted gene 5039
Gm10264 12 88329254 to 88329682 428 + protein coding gene predicted gene 10264
Gm18632 12 88331039 to 88333125 2086 + pseudogene predicted gene, 18632
Gm8655 12 88334624 to 88335475 851 + pseudogene predicted gene 8655
Gm48572 12 88338439 to 88338820 381 + pseudogene predicted gene, 48572
Gm18620 12 88339911 to 88340774 863 - pseudogene predicted gene, 18620
Gm48577 12 88342539 to 88342689 150 - pseudogene predicted gene, 48577
Gm6190 12 88353313 to 88354686 1373 - pseudogene predicted gene 6190
Cpgi4946 12 88354195 to 88354695 500 CpG island CpG island 4946
Gm5655 12 88359357 to 88360257 900 - pseudogene predicted gene 5655
Cpgi4947 12 88360428 to 88361179 751 CpG island CpG island 4947
Tssr114529 12 88360535 to 88360603 68 + TSS region transcription start site region 114529
Adck1 12 88360554 to 88461724 101170 + protein coding gene aarF domain containing kinase 1
Tssr114530 12 88360631 to 88360657 26 + TSS region transcription start site region 114530
Tssr114531 12 88360803 to 88360826 23 + TSS region transcription start site region 114531
Tssr114532 12 88360840 to 88360850 10 + TSS region transcription start site region 114532
3200001D21Rik 12 88365314 to 88377323 12009 - antisense lncRNA gene RIKEN cDNA 3200001D21 gene
Tssr3908 12 88381723 to 88381728 5 + TSS region transcription start site region 3908
4930473H19Rik 12 88434113 to 88442254 8141 - antisense lncRNA gene RIKEN cDNA 4930473H19 gene
Tssr117185 12 88442220 to 88442257 37 - TSS region transcription start site region 117185
Gm48642 12 88503768 to 88504209 441 + pseudogene predicted gene, 48642
D12Mit239 12 88568935 to 88569024 89 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 239
Gm19540 12 88588616 to 88590437 1821 - pseudogene predicted gene, 19540
Gm48665 12 88629764 to 88631878 2114 - lincRNA gene predicted gene, 48665
Gm48664 12 88631356 to 88706819 75463 + lincRNA gene predicted gene, 48664
Tssr114533 12 88632267 to 88632280 13 + TSS region transcription start site region 114533
1700040E09Rik 12 88632269 to 88665399 33130 + lincRNA gene RIKEN cDNA 1700040E09 gene
Tssr114534 12 88722866 to 88722893 27 + TSS region transcription start site region 114534
Nrxn3 12 88722876 to 90334935 1612059 + protein coding gene neurexin III
Tssr114535 12 88724934 to 88724962 28 + TSS region transcription start site region 114535
Tssr114536 12 88724970 to 88724999 29 + TSS region transcription start site region 114536
Tssr114537 12 88725000 to 88725028 28 + TSS region transcription start site region 114537
Tssr114538 12 88725595 to 88725607 12 + TSS region transcription start site region 114538
Tssr114539 12 88725657 to 88725686 29 + TSS region transcription start site region 114539
Tssr114540 12 88794806 to 88794820 14 + TSS region transcription start site region 114540
Tssr114541 12 88794995 to 88795007 12 + TSS region transcription start site region 114541
Tssr114542 12 88795011 to 88795034 23 + TSS region transcription start site region 114542
Cpgi4948 12 88795383 to 88795740 357 CpG island CpG island 4948
Tssr114543 12 88863046 to 88863054 8 + TSS region transcription start site region 114543
Tssr114544 12 88917271 to 88917276 5 + TSS region transcription start site region 114544
Gm40537 12 88934674 to 88969655 34981 - lncRNA gene predicted gene, 40537
Tssr114545 12 88953416 to 88953434 18 + TSS region transcription start site region 114545
Tssr114546 12 88953438 to 88953461 23 + TSS region transcription start site region 114546
Tssr114547 12 88957421 to 88957430 9 + TSS region transcription start site region 114547
Tssr114548 12 88990149 to 88990152 3 + TSS region transcription start site region 114548
Tssr114549 12 89013155 to 89013168 13 + TSS region transcription start site region 114549
Tssr114550 12 89013248 to 89013295 47 + TSS region transcription start site region 114550
D12Mit117 12 89019781 to 89019907 126 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 117
Tssr114551 12 89045920 to 89045925 5 + TSS region transcription start site region 114551
Tssr114552 12 89063916 to 89063958 42 + TSS region transcription start site region 114552
Tssr114553 12 89081380 to 89081383 3 + TSS region transcription start site region 114553
Tssr114554 12 89089454 to 89089456 2 + TSS region transcription start site region 114554
Tgq23 12 89146107 to 89146107 0 QTL triglyceride QTL 23
Gm37980 12 89253452 to 89255361 1909 - unclassified gene predicted gene, 37980
Cpgi4949 12 89260117 to 89260611 494 CpG island CpG island 4949
Tssr114555 12 89290591 to 89290592 1 + TSS region transcription start site region 114555
Gm27313 12 89298442 to 89298583 141 - miRNA gene predicted gene, 27313
Tssr3909 12 89397992 to 89397996 4 + TSS region transcription start site region 3909
Tssr114556 12 89403736 to 89403742 6 + TSS region transcription start site region 114556
Gm23989 12 89431336 to 89431401 65 + miRNA gene predicted gene, 23989
Tssr114557 12 89450186 to 89450191 5 + TSS region transcription start site region 114557
Tssr114558 12 89454017 to 89454020 3 + TSS region transcription start site region 114558
D12Mit276 12 89497310 to 89497413 103 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 276
D12Dcr9 12 89537078 to 89537176 98 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 9
Tssr114559 12 89559784 to 89559788 4 + TSS region transcription start site region 114559
Tssr114560 12 89591487 to 89591496 9 + TSS region transcription start site region 114560
Tssr114561 12 89601991 to 89601995 4 + TSS region transcription start site region 114561
Tssr3910 12 89635781 to 89635782 1 - TSS region transcription start site region 3910
Tssr114562 12 89642381 to 89642394 13 + TSS region transcription start site region 114562
Gm48692 12 89655723 to 89658101 2378 + unclassified gene predicted gene, 48692
Tssr114563 12 89765386 to 89765390 4 + TSS region transcription start site region 114563
Tssr114564 12 89772052 to 89772059 7 + TSS region transcription start site region 114564
Cpgi4950 12 89811875 to 89812713 838 CpG island CpG island 4950
Tssr114565 12 89812348 to 89812351 3 + TSS region transcription start site region 114565
Tssr114566 12 89812441 to 89812465 24 + TSS region transcription start site region 114566
Tssr114567 12 89812467 to 89812488 21 + TSS region transcription start site region 114567
Tssr114568 12 89812622 to 89812633 11 + TSS region transcription start site region 114568
Tssr114569 12 89812809 to 89812818 9 + TSS region transcription start site region 114569
Tssr114570 12 89812925 to 89812930 5 + TSS region transcription start site region 114570
Tssr114571 12 89813231 to 89813244 13 + TSS region transcription start site region 114571
Tssr114572 12 89813301 to 89813304 3 + TSS region transcription start site region 114572
Tssr114573 12 89813576 to 89813617 41 + TSS region transcription start site region 114573
Tssr114574 12 89834835 to 89834836 1 + TSS region transcription start site region 114574
Tssr3911 12 89852341 to 89852343 2 + TSS region transcription start site region 3911
Tssr114575 12 89870711 to 89870720 9 + TSS region transcription start site region 114575
D12Mit230 12 89994296 to 89994411 115 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 230
Gm48700 12 90068099 to 90072373 4274 + unclassified gene predicted gene, 48700
Tssr117186 12 90071028 to 90071029 1 - TSS region transcription start site region 117186
Tssr114576 12 90169035 to 90169040 5 + TSS region transcription start site region 114576
Tssr114577 12 90239263 to 90239267 4 + TSS region transcription start site region 114577
Gm2270 12 90364252 to 90367678 3426 + lincRNA gene predicted gene 2270
Gm47684 12 90393903 to 90398662 4759 - lincRNA gene predicted gene, 47684
Gm40538 12 90399667 to 90408824 9157 - lincRNA gene predicted gene, 40538
Tssr114578 12 90430462 to 90430472 10 + TSS region transcription start site region 114578
Gm47686 12 90491625 to 90492109 484 + pseudogene predicted gene, 47686
Gm2139 12 90587571 to 90588645 1074 - pseudogene predicted gene 2139
D12Mit275 12 90607794 to 90607913 119 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 275
Dio2 12 90724552 to 90738438 13886 - protein coding gene deiodinase, iodothyronine, type II
Tssr117187 12 90726909 to 90726915 6 - TSS region transcription start site region 117187
Tssr117188 12 90728111 to 90728133 22 - TSS region transcription start site region 117188
Tssr117189 12 90728198 to 90728223 25 - TSS region transcription start site region 117189
Tssr114579 12 90738092 to 90738096 4 + TSS region transcription start site region 114579
Tssr117190 12 90738095 to 90738157 62 - TSS region transcription start site region 117190
Cpgi4951 12 90738095 to 90738285 190 CpG island CpG island 4951
Gm26512 12 90738212 to 90812245 74033 + bidirectional promoter lncRNA gene predicted gene, 26512
Tssr114580 12 90738215 to 90738226 11 + TSS region transcription start site region 114580
Tssr117191 12 90738562 to 90738568 6 - TSS region transcription start site region 117191
Tssr114581 12 90738732 to 90738777 45 + TSS region transcription start site region 114581
Tssr114582 12 90738847 to 90738870 23 + TSS region transcription start site region 114582
Tssr117192 12 90738955 to 90738975 20 - TSS region transcription start site region 117192
Tssr117193 12 90739028 to 90739045 17 - TSS region transcription start site region 117193
4930544I03Rik 12 90753208 to 90969798 216590 - lincRNA gene RIKEN cDNA 4930544I03 gene
n-R5s65 12 90801619 to 90801735 116 + rRNA gene nuclear encoded rRNA 5S 65
Gm23195 12 90815197 to 90815325 128 + snoRNA gene predicted gene, 23195
Skull18 12 90920648 to 90920752 104 QTL skull morphology 18
Adip6 12 90920648 to 90920752 104 QTL adiposity 6
D12Mit6 12 90920648 to 90920752 104 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 6
Gm47688 12 90938235 to 90938382 147 - pseudogene predicted gene, 47688
Tssr117194 12 90969781 to 90969790 9 - TSS region transcription start site region 117194
Tssr117195 12 90969798 to 90969811 13 - TSS region transcription start site region 117195
Tssr114583 12 90969894 to 90969904 10 + TSS region transcription start site region 114583
1700105G05Rik 12 90969949 to 90971518 1569 + lincRNA gene RIKEN cDNA 1700105G05 gene
Tssr114584 12 90972845 to 90972855 10 + TSS region transcription start site region 114584
Gm26477 12 90981225 to 90981547 322 + unclassified non-coding RNA gene predicted gene, 26477
Cep128 12 90998492 to 91384409 385917 - protein coding gene centrosomal protein 128
Tssr117196 12 91030070 to 91030103 33 - TSS region transcription start site region 117196
Tssr117197 12 91040583 to 91040614 31 - TSS region transcription start site region 117197
5430427M07Rik 12 91045848 to 91056636 10788 + antisense lncRNA gene RIKEN cDNA 5430427M07 gene
Tssr117198 12 91063375 to 91063389 14 - TSS region transcription start site region 117198
Tssr117199 12 91099710 to 91099715 5 - TSS region transcription start site region 117199
Tssr117200 12 91110252 to 91110255 3 - TSS region transcription start site region 117200
Gm44370 12 91123252 to 91123363 111 + miRNA gene predicted gene, 44370
Ccs1 12 100056850 to 90920648 -9136202 QTL colon cancer susceptibility 1
Pwgrq7 12 108679049 to 90970593 -17708456 QTL pre-weaning growth rate QTL 7