Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:8734456-10414476

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pum2 12 8674134 to 8752581 78447 + protein coding gene pumilio RNA-binding family member 2
Tssr112736 12 8739677 to 8739704 27 + TSS region transcription start site region 112736
Tssr112737 12 8750115 to 8750153 38 + TSS region transcription start site region 112737
Tssr115723 12 8762066 to 8762070 4 - TSS region transcription start site region 115723
Gm4755 12 8765788 to 8771253 5465 - bidirectional promoter lncRNA gene predicted gene 4755
Cpgi4399 12 8770893 to 8773183 2290 CpG island CpG island 4399
Tssr112738 12 8771040 to 8771062 22 + TSS region transcription start site region 112738
Tssr112739 12 8771317 to 8771328 11 + TSS region transcription start site region 112739
Tssr112740 12 8771345 to 8771361 16 + TSS region transcription start site region 112740
Tssr112741 12 8771378 to 8771394 16 + TSS region transcription start site region 112741
Sdc1 12 8771396 to 8793716 22320 + protein coding gene syndecan 1
Tssr112742 12 8771405 to 8771425 20 + TSS region transcription start site region 112742
Tssr3790 12 8771430 to 8771444 14 + TSS region transcription start site region 3790
Tssr112743 12 8771448 to 8771464 16 + TSS region transcription start site region 112743
Tssr112744 12 8774569 to 8774573 4 + TSS region transcription start site region 112744
D12Mit104.1 12 8785895 to 8786025 130 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104.1
D12Mit104 12 8786045 to 8786191 146 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104
D12Mit104.2 12 8786129 to 8786295 166 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 104.2
Tssr112745 12 8790700 to 8790740 40 + TSS region transcription start site region 112745
Tssr112746 12 8791786 to 8791831 45 + TSS region transcription start site region 112746
Tssr112747 12 8791887 to 8791936 49 + TSS region transcription start site region 112747
Tssr112748 12 8792178 to 8792192 14 + TSS region transcription start site region 112748
Tssr112749 12 8792427 to 8792446 19 + TSS region transcription start site region 112749
Tssr112750 12 8807803 to 8807808 5 + TSS region transcription start site region 112750
Gm33418 12 8830357 to 8831248 891 - lncRNA gene predicted gene, 33418
9930038B18Rik 12 8873187 to 8893473 20286 - lincRNA gene RIKEN cDNA 9930038B18 gene
Gm33483 12 8879430 to 8912909 33479 + lncRNA gene predicted gene, 33483
Gm47391 12 8912924 to 8917479 4555 + lincRNA gene predicted gene, 47391
Tssr115724 12 8916452 to 8916463 11 - TSS region transcription start site region 115724
Cpgi4400 12 8921398 to 8922580 1182 CpG island CpG island 4400
Tssr112751 12 8921598 to 8921671 73 + TSS region transcription start site region 112751
Laptm4a 12 8921664 to 8938742 17078 + protein coding gene lysosomal-associated protein transmembrane 4A
Tssr112752 12 8921687 to 8921704 17 + TSS region transcription start site region 112752
Tssr112753 12 8921707 to 8921710 3 + TSS region transcription start site region 112753
Tssr115725 12 8921844 to 8921873 29 - TSS region transcription start site region 115725
Tssr112754 12 8922017 to 8922028 11 + TSS region transcription start site region 112754
Tssr112755 12 8922042 to 8922054 12 + TSS region transcription start site region 112755
Tssr112756 12 8922061 to 8922117 56 + TSS region transcription start site region 112756
Tssr112757 12 8928148 to 8928166 18 + TSS region transcription start site region 112757
Tssr112758 12 8928232 to 8928237 5 + TSS region transcription start site region 112758
Tssr112759 12 8932387 to 8932401 14 + TSS region transcription start site region 112759
Tssr112760 12 8934930 to 8934942 12 + TSS region transcription start site region 112760
Tssr112761 12 8936007 to 8936039 32 + TSS region transcription start site region 112761
Tssr112762 12 8937428 to 8937449 21 + TSS region transcription start site region 112762
Tssr112763 12 8938450 to 8938465 15 + TSS region transcription start site region 112763
Cpgi4401 12 8947721 to 8948359 638 CpG island CpG island 4401
Matn3 12 8947929 to 8972028 24099 + protein coding gene matrilin 3
Tssr112764 12 8947962 to 8947980 18 + TSS region transcription start site region 112764
Tssr112765 12 8947993 to 8948004 11 + TSS region transcription start site region 112765
Cpgi4402 12 8973710 to 8974300 590 CpG island CpG island 4402
Wdr35 12 8973992 to 9028848 54856 + protein coding gene WD repeat domain 35
Tssr112766 12 8974003 to 8974079 76 + TSS region transcription start site region 112766
Tssr112767 12 8974828 to 8974857 29 + TSS region transcription start site region 112767
D12Mit267 12 8984688 to 8984887 199 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 267
1700113P08Rik 12 9029433 to 9030454 1021 unclassified gene RIKEN cDNA 1700113P08 gene
Ttc32 12 9029448 to 9038650 9202 + protein coding gene tetratricopeptide repeat domain 32
Cpgi4403 12 9029895 to 9030617 722 CpG island CpG island 4403
Tssr112768 12 9029982 to 9030012 30 + TSS region transcription start site region 112768
Tssr112769 12 9030015 to 9030045 30 + TSS region transcription start site region 112769
Gm46323 12 9371426 to 9415113 43687 + lincRNA gene predicted gene, 46323
Gm7099 12 9429547 to 9430100 553 + pseudogene predicted gene 7099
Gm36096 12 9454781 to 9456338 1557 + pseudogene predicted gene, 36096
Gm18696 12 9473101 to 9473374 273 - pseudogene predicted gene, 18696
Tssr112770 12 9485403 to 9485407 4 + TSS region transcription start site region 112770
Gm48762 12 9494005 to 9496908 2903 - lincRNA gene predicted gene, 48762
Gm48764 12 9503584 to 9509637 6053 - lincRNA gene predicted gene, 48764
1700022H16Rik 12 9565236 to 9570585 5349 - bidirectional promoter lncRNA gene RIKEN cDNA 1700022H16 gene
Cpgi4404 12 9574353 to 9574899 546 CpG island CpG island 4404
Tssr112771 12 9574437 to 9574448 11 + TSS region transcription start site region 112771
Osr1 12 9574442 to 9581500 7058 + protein coding gene odd-skipped related transcription factor 1
Tssr112772 12 9574456 to 9574476 20 + TSS region transcription start site region 112772
Tssr112773 12 9574478 to 9574497 19 + TSS region transcription start site region 112773
Tssr112774 12 9574511 to 9574527 16 + TSS region transcription start site region 112774
Cpgi4405 12 9579223 to 9579874 651 CpG island CpG island 4405
Cpgi4406 12 9580575 to 9580834 259 CpG island CpG island 4406
Tssr112775 12 9580798 to 9580810 12 + TSS region transcription start site region 112775
Tssr112776 12 9580819 to 9580832 13 + TSS region transcription start site region 112776
Tssr112777 12 9580841 to 9580850 9 + TSS region transcription start site region 112777
Tssr112778 12 9580851 to 9580872 21 + TSS region transcription start site region 112778
Cpgi4407 12 9580985 to 9581428 443 CpG island CpG island 4407
Gm40268 12 9581966 to 9600939 18973 + lncRNA gene predicted gene, 40268
Cpgi4408 12 9584730 to 9585145 415 CpG island CpG island 4408
Tssr112779 12 9585013 to 9585040 27 + TSS region transcription start site region 112779
Gm23979 12 9643690 to 9643817 127 - snoRNA gene predicted gene, 23979
Gm48774 12 9690691 to 9691670 979 + pseudogene predicted gene, 48774
Gm48790 12 9729519 to 9734209 4690 + lincRNA gene predicted gene, 48790
Gm22845 12 9865347 to 9865450 103 - snRNA gene predicted gene, 22845
Gm33734 12 9919594 to 9938813 19219 + lncRNA gene predicted gene, 33734
Cpgi4409 12 9936577 to 9936786 209 CpG island CpG island 4409
Gm46324 12 10077651 to 10082680 5029 + lncRNA gene predicted gene, 46324
Gm5182 12 10152142 to 10158233 6091 + pseudogene predicted gene 5182
Gm48791 12 10177143 to 10224794 47651 + lincRNA gene predicted gene, 48791
Gm48792 12 10219860 to 10222329 2469 - unclassified gene predicted gene, 48792
Gm48793 12 10322866 to 10326643 3777 + pseudogene predicted gene, 48793
Gm48794 12 10368466 to 10368670 204 - pseudogene predicted gene, 48794
Tssr112780 12 10369967 to 10369984 17 + TSS region transcription start site region 112780
Nt5c1b 12 10369973 to 10390175 20202 + protein coding gene 5'-nucleotidase, cytosolic IB
Cpgi4410 12 10374859 to 10375045 186 CpG island CpG island 4410
Cpgi4411 12 10390679 to 10391334 655 CpG island CpG island 4411
Tssr112781 12 10390756 to 10390836 80 + TSS region transcription start site region 112781
Rdh14 12 10390772 to 10395562 4790 + protein coding gene retinol dehydrogenase 14 (all-trans and 9-cis)
Tssr112782 12 10390868 to 10390884 16 + TSS region transcription start site region 112782
Tssr112783 12 10391050 to 10391071 21 + TSS region transcription start site region 112783
Tssr112784 12 10391073 to 10391089 16 + TSS region transcription start site region 112784