Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:87204118-88084620

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117 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Samd15 12 87200458 to 87213538 13080 + protein coding gene sterile alpha motif domain containing 15
D12Mit76 12 87215652 to 87215908 256 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 76
Noxred1 12 87221123 to 87238601 17478 - protein coding gene NADP+ dependent oxidoreductase domain containing 1
Tssr117162 12 87225089 to 87225128 39 - TSS region transcription start site region 117162
Tssr117163 12 87236994 to 87237004 10 - TSS region transcription start site region 117163
Tssr117164 12 87237005 to 87237019 14 - TSS region transcription start site region 117164
Tssr117165 12 87238703 to 87238752 49 - TSS region transcription start site region 117165
Tssr117166 12 87238756 to 87238771 15 - TSS region transcription start site region 117166
Vipas39 12 87238868 to 87266256 27388 - protein coding gene VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Tssr117167 12 87254964 to 87254982 18 - TSS region transcription start site region 117167
Tssr117168 12 87260694 to 87260708 14 - TSS region transcription start site region 117168
Tssr117169 12 87263899 to 87263910 11 - TSS region transcription start site region 117169
Tssr114520 12 87264648 to 87264672 24 + TSS region transcription start site region 114520
Cpgi4939 12 87266079 to 87267412 1333 CpG island CpG island 4939
Tssr117170 12 87266208 to 87266219 11 - TSS region transcription start site region 117170
Tssr117171 12 87266227 to 87266301 74 - TSS region transcription start site region 117171
Ahsa1 12 87266484 to 87273998 7514 + protein coding gene AHA1, activator of heat shock protein ATPase 1
Tssr114521 12 87266696 to 87266760 64 + TSS region transcription start site region 114521
Gm47293 12 87266858 to 87266933 75 + miRNA gene predicted gene, 47293
Ism2 12 87278638 to 87299705 21067 - protein coding gene isthmin 2
Cpgi4940 12 87299130 to 87300673 1543 CpG island CpG island 4940
Sptlc2 12 87305058 to 87388355 83297 - protein coding gene serine palmitoyltransferase, long chain base subunit 2
Gm26764 12 87332488 to 87335655 3167 + lincRNA gene predicted gene, 26764
Tssr117172 12 87354145 to 87354151 6 - TSS region transcription start site region 117172
Tssr117173 12 87369017 to 87369034 17 - TSS region transcription start site region 117173
Gm48806 12 87371992 to 87372315 323 + pseudogene predicted gene, 48806
Tssr3906 12 87373904 to 87373905 1 + TSS region transcription start site region 3906
D12Mit178 12 87376578 to 87376727 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 178
Gm33444 12 87383582 to 87410739 27157 + lncRNA gene predicted gene, 33444
Cpgi4941 12 87387418 to 87388625 1207 CpG island CpG island 4941
Tssr114522 12 87387500 to 87387503 3 + TSS region transcription start site region 114522
Tssr117174 12 87388189 to 87388247 58 - TSS region transcription start site region 117174
Tssr117175 12 87388248 to 87388289 41 - TSS region transcription start site region 117175
Tssr117176 12 87388317 to 87388336 19 - TSS region transcription start site region 117176
Tssr114523 12 87388632 to 87388676 44 + TSS region transcription start site region 114523
Gm48873 12 87394444 to 87395548 1104 + pseudogene predicted gene, 48873
Cpgi4942 12 87408149 to 87408310 161 CpG island CpG island 4942
Tssr114524 12 87420464 to 87420468 4 + TSS region transcription start site region 114524
Gm8557 12 87420511 to 87420985 474 + pseudogene predicted gene 8557
Tssr117177 12 87421014 to 87421016 2 - TSS region transcription start site region 117177
Alkbh1 12 87428077 to 87443839 15762 - protein coding gene alkB homolog 1, histone H2A dioxygenase
Mir3068 12 87437679 to 87437757 78 - miRNA gene microRNA 3068
Gm29362 12 87437684 to 87437816 132 - lincRNA gene predicted gene 29362
2700073G19Rik 12 87442848 to 87444017 1169 - protein coding gene RIKEN cDNA 2700073G19 gene
Cpgi4943 12 87443320 to 87444036 716 CpG island CpG island 4943
Tssr117178 12 87443800 to 87443850 50 - TSS region transcription start site region 117178
Slirp 12 87443896 to 87449924 6028 + protein coding gene SRA stem-loop interacting RNA binding protein
Tssr114525 12 87443904 to 87443934 30 + TSS region transcription start site region 114525
Snw1 12 87449910 to 87472299 22389 - protein coding gene SNW domain containing 1
Tssr117179 12 87459448 to 87459486 38 - TSS region transcription start site region 117179
Cpgi4944 12 87471811 to 87472453 642 CpG island CpG island 4944
Tssr117180 12 87472267 to 87472332 65 - TSS region transcription start site region 117180
Tssr117181 12 87477197 to 87477210 13 - TSS region transcription start site region 117181
Tssr164705 12 87478143 to 87478150 7 + TSS region transcription start site region 164705
Cpgi4945 12 87479990 to 87480276 286 CpG island CpG island 4945
Gm18983 12 87480108 to 87482836 2728 + pseudogene predicted gene, 18983
Gm18624 12 87485143 to 87485800 657 + pseudogene predicted gene, 18624
Gm5788 12 87494721 to 87495155 434 + pseudogene predicted pseudogene 5788
Gm18625 12 87496093 to 87496363 270 + pseudogene predicted gene, 18625
Gm49362 12 87507772 to 87508264 492 + pseudogene predicted gene, 49362
Tssr114526 12 87514315 to 87514319 4 + TSS region transcription start site region 114526
Gm8300 12 87514316 to 87518265 3949 + protein coding gene predicted gene 8300
Gm18626 12 87519727 to 87520870 1143 + pseudogene predicted gene, 18626
Gm48110 12 87537905 to 87538304 399 + pseudogene predicted gene, 48110
Gm18615 12 87541197 to 87543228 2031 - pseudogene predicted gene, 18615
Oog1 12 87602688 to 87608850 6162 + protein coding gene oogenesin 1
Gm4027 12 87618869 to 87622955 4086 + protein coding gene predicted gene 4027
Gm48153 12 87629993 to 87630401 408 + pseudogene predicted gene, 48153
Gm3742 12 87633281 to 87643442 10161 - pseudogene predicted gene 3742
Gm16381 12 87644118 to 87644620 502 - protein coding gene predicted gene 16381
Gm21937 12 87759158 to 87759375 217 + pseudogene predicted gene, 21937
Gm48150 12 87763959 to 87764316 357 - pseudogene predicted gene, 48150
Gm21559 12 87765449 to 87766303 854 - pseudogene predicted gene, 21559
Gm21569 12 87767647 to 87769460 1813 - pseudogene predicted gene, 21569
Gm21319 12 87772425 to 87775755 3330 - protein coding gene predicted gene, 21319
Gm21939 12 87781143 to 87783915 2772 + pseudogene predicted gene, 21939
Gm48152 12 87786283 to 87786943 660 + pseudogene predicted gene, 48152
Gm21936 12 87795512 to 87795946 434 + protein coding gene predicted gene, 21936
Gm48149 12 87796883 to 87797144 261 + pseudogene predicted gene, 48149
Gm48154 12 87808537 to 87809024 487 + pseudogene predicted gene, 48154
BB287469 12 87816577 to 87820676 4099 + protein coding gene expressed sequence BB287469
Gm48151 12 87827710 to 87828118 408 + pseudogene predicted gene, 48151
Gm21038 12 87831002 to 87841162 10160 - pseudogene predicted gene, 21038
Gm2001 12 87841965 to 87842186 221 - protein coding gene predicted gene 2001
Gm1995 12 87861366 to 87863967 2601 + pseudogene predicted gene 1995
Gm18627 12 87865785 to 87868203 2418 + pseudogene predicted gene, 18627
Tssr114527 12 87874070 to 87874075 5 + TSS region transcription start site region 114527
Gm2016 12 87874072 to 87877859 3787 + protein coding gene predicted gene 2016
Gm49363 12 87889167 to 87889640 473 + pseudogene predicted gene, 49363
Tssr3907 12 87892802 to 87892806 4 + TSS region transcription start site region 3907
Gm2022 12 87895370 to 87895804 434 + protein coding gene predicted pseudogene 2022
Gm18616 12 87910965 to 87913545 2580 - pseudogene predicted gene, 18616
Gm2035 12 87919423 to 87919857 434 - pseudogene predicted pseudogene 2035
Tssr117182 12 87922439 to 87922445 6 - TSS region transcription start site region 117182
Gm18628 12 87927534 to 87928008 474 + pseudogene predicted gene, 18628
Gm2042 12 87954480 to 87960682 6202 + protein coding gene predicted gene 2042
Gm2046 12 87970828 to 87980231 9403 + protein coding gene predicted gene 2046
Gm48389 12 87973529 to 87973757 228 + pseudogene predicted gene, 48389
Gm48388 12 87980012 to 87980224 212 + pseudogene predicted gene, 48388
Tssr114528 12 87985392 to 87985396 4 + TSS region transcription start site region 114528
Gm2099 12 87985619 to 87988959 3340 + pseudogene predicted gene 2099
Gm46992 12 87991489 to 87994707 3218 - pseudogene predicted gene 46992
Gm2075 12 88011848 to 88012282 434 + pseudogene predicted gene 2075
Gm6803 12 88018337 to 88018771 434 - protein coding gene predicted gene 6803
Tssr117183 12 88021272 to 88021281 9 - TSS region transcription start site region 117183
Gm2056 12 88027004 to 88027438 434 + pseudogene predicted gene 2056
Gm18629 12 88028811 to 88029757 946 + pseudogene predicted gene, 18629
Gm46993 12 88036540 to 88036798 258 - pseudogene predicted gene 46993
Gm18247 12 88040682 to 88041949 1267 + pseudogene predicted gene, 18247
Gm46998 12 88044383 to 88044712 329 - pseudogene predicted gene 46998
Gm46997 12 88046286 to 88046502 216 - pseudogene predicted gene 46997
Gm46994 12 88058081 to 88058299 218 + pseudogene predicted gene 46994
Gm46995 12 88059093 to 88061479 2386 + pseudogene predicted gene 46995
Gm46996 12 88064368 to 88064775 407 - pseudogene predicted gene 46996
Gm5789 12 88066543 to 88067407 864 + pseudogene predicted gene 5789
Gm18617 12 88072937 to 88073195 258 - pseudogene predicted gene, 18617
Gm16368 12 88083697 to 88084131 434 + pseudogene predicted pseudogene 16368