Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:87163868-87341256

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gstz1 12 87147165 to 87164723 17558 + protein coding gene glutathione transferase zeta 1 (maleylacetoacetate isomerase)
Tssr114516 12 87163857 to 87163869 12 + TSS region transcription start site region 114516
Tmed8 12 87166237 to 87200229 33992 - protein coding gene transmembrane p24 trafficking protein 8
Gm40496 12 87168628 to 87184502 15874 + lncRNA gene predicted gene, 40496
Cpgi4938 12 87199538 to 87200543 1005 CpG island CpG island 4938
Tssr117160 12 87200200 to 87200284 84 - TSS region transcription start site region 117160
Tssr117161 12 87200306 to 87200344 38 - TSS region transcription start site region 117161
Tssr114517 12 87200336 to 87200345 9 + TSS region transcription start site region 114517
Samd15 12 87200458 to 87213538 13080 + protein coding gene sterile alpha motif domain containing 15
Tssr114518 12 87200502 to 87200522 20 + TSS region transcription start site region 114518
Tssr114519 12 87200524 to 87200544 20 + TSS region transcription start site region 114519
D12Mit76 12 87215652 to 87215908 256 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 76
Noxred1 12 87221123 to 87238601 17478 - protein coding gene NADP+ dependent oxidoreductase domain containing 1
Tssr117162 12 87225089 to 87225128 39 - TSS region transcription start site region 117162
Tssr117163 12 87236994 to 87237004 10 - TSS region transcription start site region 117163
Tssr117164 12 87237005 to 87237019 14 - TSS region transcription start site region 117164
Tssr117165 12 87238703 to 87238752 49 - TSS region transcription start site region 117165
Tssr117166 12 87238756 to 87238771 15 - TSS region transcription start site region 117166
Vipas39 12 87238868 to 87266256 27388 - protein coding gene VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Tssr117167 12 87254964 to 87254982 18 - TSS region transcription start site region 117167
Tssr117168 12 87260694 to 87260708 14 - TSS region transcription start site region 117168
Tssr117169 12 87263899 to 87263910 11 - TSS region transcription start site region 117169
Tssr114520 12 87264648 to 87264672 24 + TSS region transcription start site region 114520
Cpgi4939 12 87266079 to 87267412 1333 CpG island CpG island 4939
Tssr117170 12 87266208 to 87266219 11 - TSS region transcription start site region 117170
Tssr117171 12 87266227 to 87266301 74 - TSS region transcription start site region 117171
Ahsa1 12 87266484 to 87273998 7514 + protein coding gene AHA1, activator of heat shock protein ATPase 1
Tssr114521 12 87266696 to 87266760 64 + TSS region transcription start site region 114521
Gm47293 12 87266858 to 87266933 75 + miRNA gene predicted gene, 47293
Ism2 12 87278638 to 87299705 21067 - protein coding gene isthmin 2
Cpgi4940 12 87299130 to 87300673 1543 CpG island CpG island 4940
Sptlc2 12 87305058 to 87388355 83297 - protein coding gene serine palmitoyltransferase, long chain base subunit 2
Gm26764 12 87332488 to 87335655 3167 + lincRNA gene predicted gene, 26764