Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:86947165-87364723

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi4929 12 86946398 to 86948097 1699 CpG island CpG island 4929
Cipc 12 86947043 to 86965362 18319 + protein coding gene CLOCK interacting protein, circadian
Tssr117143 12 86947328 to 86947335 7 - TSS region transcription start site region 117143
Tssr114491 12 86947369 to 86947430 61 + TSS region transcription start site region 114491
Tssr114492 12 86947431 to 86947481 50 + TSS region transcription start site region 114492
Tssr114493 12 86948880 to 86948883 3 + TSS region transcription start site region 114493
Tssr117144 12 86949569 to 86949583 14 - TSS region transcription start site region 117144
Tssr114494 12 86949722 to 86949742 20 + TSS region transcription start site region 114494
Tssr117145 12 86950451 to 86950456 5 - TSS region transcription start site region 117145
Tssr117146 12 86950537 to 86950566 29 - TSS region transcription start site region 117146
Tssr114495 12 86952500 to 86952509 9 + TSS region transcription start site region 114495
Tssr114496 12 86952593 to 86952614 21 + TSS region transcription start site region 114496
Tssr114497 12 86952736 to 86952744 8 + TSS region transcription start site region 114497
Cpgi4930 12 86960321 to 86960565 244 CpG island CpG island 4930
Tssr114498 12 86960363 to 86960391 28 + TSS region transcription start site region 114498
Cpgi4931 12 86974484 to 86974941 457 CpG island CpG island 4931
Cpgi4932 12 86977766 to 86977962 196 CpG island CpG island 4932
Zdhhc22 12 86980763 to 86990430 9667 - protein coding gene zinc finger, DHHC-type containing 22
Tssr117147 12 86983088 to 86983108 20 - TSS region transcription start site region 117147
Cpgi4933 12 86983385 to 86983837 452 CpG island CpG island 4933
Cpgi4934 12 86989675 to 86990801 1126 CpG island CpG island 4934
Tssr117148 12 86990451 to 86990467 16 - TSS region transcription start site region 117148
Tssr117149 12 86990468 to 86990483 15 - TSS region transcription start site region 117149
Tssr117150 12 86990484 to 86990494 10 - TSS region transcription start site region 117150
Tssr117151 12 86990503 to 86990521 18 - TSS region transcription start site region 117151
Tssr117152 12 86990522 to 86990533 11 - TSS region transcription start site region 117152
Tssr117153 12 86990569 to 86990588 19 - TSS region transcription start site region 117153
Tssr117154 12 86990603 to 86990612 9 - TSS region transcription start site region 117154
Tssr3904 12 86990659 to 86990662 3 - TSS region transcription start site region 3904
Tssr114499 12 87021321 to 87021333 12 + TSS region transcription start site region 114499
Tmem63c 12 87021340 to 87090043 68703 + protein coding gene transmembrane protein 63c
Tssr114500 12 87021366 to 87021372 6 + TSS region transcription start site region 114500
Tssr114501 12 87021375 to 87021382 7 + TSS region transcription start site region 114501
Tssr114502 12 87026286 to 87026297 11 + TSS region transcription start site region 114502
Cpgi4935 12 87026301 to 87026937 636 CpG island CpG island 4935
Tssr114503 12 87026318 to 87026337 19 + TSS region transcription start site region 114503
Tssr114504 12 87026458 to 87026522 64 + TSS region transcription start site region 114504
Tssr114505 12 87026570 to 87026583 13 + TSS region transcription start site region 114505
Gm25847 12 87034766 to 87034861 95 + miRNA gene predicted gene, 25847
Tssr117155 12 87048744 to 87048746 2 - TSS region transcription start site region 117155
Gm15745 12 87067477 to 87067591 114 + pseudogene predicted gene 15745
Gm18499 12 87080656 to 87081676 1020 - pseudogene predicted gene, 18499
Ngb 12 87097531 to 87102539 5008 - protein coding gene neuroglobin
Cpgi4936 12 87101954 to 87102602 648 CpG island CpG island 4936
Pomt2 12 87106861 to 87147968 41107 - protein coding gene protein-O-mannosyltransferase 2
Tssr3905 12 87109325 to 87109330 5 + TSS region transcription start site region 3905
Cpgi4937 12 87146967 to 87148392 1425 CpG island CpG island 4937
Tssr114506 12 87147149 to 87147201 52 + TSS region transcription start site region 114506
Gstz1 12 87147165 to 87164723 17558 + protein coding gene glutathione transferase zeta 1 (maleylacetoacetate isomerase)
Tssr117156 12 87147418 to 87147476 58 - TSS region transcription start site region 117156
Tssr117157 12 87147484 to 87147495 11 - TSS region transcription start site region 117157
Tssr114507 12 87147703 to 87147783 80 + TSS region transcription start site region 114507
Tssr114508 12 87147785 to 87147792 7 + TSS region transcription start site region 114508
Tssr117158 12 87147883 to 87147908 25 - TSS region transcription start site region 117158
Tssr114509 12 87147970 to 87147997 27 + TSS region transcription start site region 114509
Gm6566 12 87149475 to 87155485 6010 - antisense lncRNA gene predicted gene 6566
Tssr114510 12 87157580 to 87157599 19 + TSS region transcription start site region 114510
Tssr114511 12 87157600 to 87157641 41 + TSS region transcription start site region 114511
Tssr114512 12 87157876 to 87157890 14 + TSS region transcription start site region 114512
Tssr117159 12 87159947 to 87159948 1 - TSS region transcription start site region 117159
Tssr114513 12 87163703 to 87163729 26 + TSS region transcription start site region 114513
Tssr114514 12 87163771 to 87163797 26 + TSS region transcription start site region 114514
Tssr114515 12 87163817 to 87163831 14 + TSS region transcription start site region 114515
Tssr114516 12 87163857 to 87163869 12 + TSS region transcription start site region 114516
Tmed8 12 87166237 to 87200229 33992 - protein coding gene transmembrane p24 trafficking protein 8
Gm40496 12 87168628 to 87184502 15874 + lncRNA gene predicted gene, 40496
Cpgi4938 12 87199538 to 87200543 1005 CpG island CpG island 4938
Tssr117160 12 87200200 to 87200284 84 - TSS region transcription start site region 117160
Tssr117161 12 87200306 to 87200344 38 - TSS region transcription start site region 117161
Tssr114517 12 87200336 to 87200345 9 + TSS region transcription start site region 114517
Samd15 12 87200458 to 87213538 13080 + protein coding gene sterile alpha motif domain containing 15
Tssr114518 12 87200502 to 87200522 20 + TSS region transcription start site region 114518
Tssr114519 12 87200524 to 87200544 20 + TSS region transcription start site region 114519
D12Mit76 12 87215652 to 87215908 256 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 76
Noxred1 12 87221123 to 87238601 17478 - protein coding gene NADP+ dependent oxidoreductase domain containing 1
Tssr117162 12 87225089 to 87225128 39 - TSS region transcription start site region 117162
Tssr117163 12 87236994 to 87237004 10 - TSS region transcription start site region 117163
Tssr117164 12 87237005 to 87237019 14 - TSS region transcription start site region 117164
Tssr117165 12 87238703 to 87238752 49 - TSS region transcription start site region 117165
Tssr117166 12 87238756 to 87238771 15 - TSS region transcription start site region 117166
Vipas39 12 87238868 to 87266256 27388 - protein coding gene VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Tssr117167 12 87254964 to 87254982 18 - TSS region transcription start site region 117167
Tssr117168 12 87260694 to 87260708 14 - TSS region transcription start site region 117168
Tssr117169 12 87263899 to 87263910 11 - TSS region transcription start site region 117169
Tssr114520 12 87264648 to 87264672 24 + TSS region transcription start site region 114520
Cpgi4939 12 87266079 to 87267412 1333 CpG island CpG island 4939
Tssr117170 12 87266208 to 87266219 11 - TSS region transcription start site region 117170
Tssr117171 12 87266227 to 87266301 74 - TSS region transcription start site region 117171
Ahsa1 12 87266484 to 87273998 7514 + protein coding gene AHA1, activator of heat shock protein ATPase 1
Tssr114521 12 87266696 to 87266760 64 + TSS region transcription start site region 114521
Gm47293 12 87266858 to 87266933 75 + miRNA gene predicted gene, 47293
Ism2 12 87278638 to 87299705 21067 - protein coding gene isthmin 2
Cpgi4940 12 87299130 to 87300673 1543 CpG island CpG island 4940
Sptlc2 12 87305058 to 87388355 83297 - protein coding gene serine palmitoyltransferase, long chain base subunit 2
Gm26764 12 87332488 to 87335655 3167 + lincRNA gene predicted gene, 26764
Tssr117172 12 87354145 to 87354151 6 - TSS region transcription start site region 117172