Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:85524633-86124648

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr114408 12 85524653 to 85524664 11 + TSS region transcription start site region 114408
Tssr114409 12 85524669 to 85524683 14 + TSS region transcription start site region 114409
Tssr114410 12 85524689 to 85524713 24 + TSS region transcription start site region 114410
Tssr114411 12 85524715 to 85524742 27 + TSS region transcription start site region 114411
Tssr114412 12 85524831 to 85524841 10 + TSS region transcription start site region 114412
Gm32296 12 85529551 to 85541913 12362 + lincRNA gene predicted gene, 32296
D12Mit161 12 85561012 to 85561109 97 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 161
Gm32348 12 85569331 to 85585379 16048 + lncRNA gene predicted gene, 32348
D12Mit204 12 85580104 to 85580269 165 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 204
Gm47863 12 85597019 to 85599191 2172 - bidirectional promoter lncRNA gene predicted gene, 47863
Tssr114413 12 85598240 to 85598275 35 + TSS region transcription start site region 114413
Tssr114414 12 85598287 to 85598308 21 + TSS region transcription start site region 114414
Tssr114415 12 85598402 to 85598438 36 + TSS region transcription start site region 114415
Cpgi4901 12 85598530 to 85600335 1805 CpG island CpG island 4901
Tssr114416 12 85598600 to 85598607 7 + TSS region transcription start site region 114416
Tssr114417 12 85598707 to 85598735 28 + TSS region transcription start site region 114417
Jdp2 12 85599027 to 85639878 40851 + protein coding gene Jun dimerization protein 2
Tssr114418 12 85599047 to 85599090 43 + TSS region transcription start site region 114418
Tssr117095 12 85599181 to 85599243 62 - TSS region transcription start site region 117095
Tssr114419 12 85599350 to 85599362 12 + TSS region transcription start site region 114419
Tssr114420 12 85599388 to 85599407 19 + TSS region transcription start site region 114420
Tssr114421 12 85608292 to 85608304 12 + TSS region transcription start site region 114421
Tssr114422 12 85608322 to 85608340 18 + TSS region transcription start site region 114422
Tssr114423 12 85614387 to 85614390 3 + TSS region transcription start site region 114423
Tssr117096 12 85639021 to 85639046 25 - TSS region transcription start site region 117096
Tssr114424 12 85639541 to 85639560 19 + TSS region transcription start site region 114424
Gm33312 12 85662442 to 85662868 426 + pseudogene predicted gene, 33312
Tssr114425 12 85686648 to 85686702 54 + TSS region transcription start site region 114425
Tssr114426 12 85686713 to 85686728 15 + TSS region transcription start site region 114426
Batf 12 85686720 to 85709087 22367 + protein coding gene basic leucine zipper transcription factor, ATF-like
Cpgi4902 12 85705466 to 85705890 424 CpG island CpG island 4902
Tssr117097 12 85705612 to 85705618 6 - TSS region transcription start site region 117097
Tssr117098 12 85705635 to 85705674 39 - TSS region transcription start site region 117098
Tssr114427 12 85705980 to 85705983 3 + TSS region transcription start site region 114427
Tssr114428 12 85715256 to 85715258 2 + TSS region transcription start site region 114428
n-R5s64 12 85718477 to 85718595 118 - rRNA gene nuclear encoded rRNA 5S 64
Gm47285 12 85718503 to 85718563 60 - miRNA gene predicted gene, 47285
Gm47901 12 85728457 to 85728719 262 + pseudogene predicted gene, 47901
Cpgi4903 12 85745764 to 85747382 1618 CpG island CpG island 4903
Flvcr2 12 85746539 to 85813585 67046 + protein coding gene feline leukemia virus subgroup C cellular receptor 2
Tssr114429 12 85746540 to 85746551 11 + TSS region transcription start site region 114429
Tssr114430 12 85746552 to 85746572 20 + TSS region transcription start site region 114430
Tssr114431 12 85746574 to 85746604 30 + TSS region transcription start site region 114431
Tssr117099 12 85747669 to 85747678 9 - TSS region transcription start site region 117099
Tssr117100 12 85747700 to 85747709 9 - TSS region transcription start site region 117100
Gm40478 12 85753787 to 85759526 5739 - lncRNA gene predicted gene, 40478
Tssr117101 12 85759452 to 85759461 9 - TSS region transcription start site region 117101
Tssr114432 12 85759511 to 85759537 26 + TSS region transcription start site region 114432
D12Mit256.3 12 85765408 to 85765519 111 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 256.3
D12Mit256 12 85765494 to 85765612 118 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 256
Tssr114433 12 85774815 to 85774830 15 + TSS region transcription start site region 114433
Tssr114434 12 85814548 to 85814552 4 + TSS region transcription start site region 114434
Erg28 12 85815448 to 85824550 9102 - protein coding gene ergosterol biosynthesis 28
Tssr117102 12 85815777 to 85815812 35 - TSS region transcription start site region 117102
Tssr117103 12 85816401 to 85816418 17 - TSS region transcription start site region 117103
Tssr117104 12 85817822 to 85817837 15 - TSS region transcription start site region 117104
Tssr117105 12 85817874 to 85817892 18 - TSS region transcription start site region 117105
Tssr117106 12 85817920 to 85817933 13 - TSS region transcription start site region 117106
Cpgi4904 12 85824467 to 85825350 883 CpG island CpG island 4904
Tssr117107 12 85824496 to 85824505 9 - TSS region transcription start site region 117107
Tssr117108 12 85824506 to 85824555 49 - TSS region transcription start site region 117108
Tssr117109 12 85824560 to 85824569 9 - TSS region transcription start site region 117109
Tssr114435 12 85824633 to 85824648 15 + TSS region transcription start site region 114435
Tssr117110 12 85824845 to 85824889 44 - TSS region transcription start site region 117110
Tssr114436 12 85824918 to 85825009 91 + TSS region transcription start site region 114436
Ttll5 12 85824920 to 86053760 228840 + protein coding gene tubulin tyrosine ligase-like family, member 5
Tssr114437 12 85904235 to 85904249 14 + TSS region transcription start site region 114437
Tssr114438 12 85956405 to 85956415 10 + TSS region transcription start site region 114438
Tssr114439 12 85956437 to 85956452 15 + TSS region transcription start site region 114439
Tssr114440 12 85960280 to 85960291 11 + TSS region transcription start site region 114440
Tssr114441 12 85960406 to 85960409 3 + TSS region transcription start site region 114441
Gm26531 12 85962598 to 85979021 16423 - antisense lncRNA gene predicted gene, 26531
Cpgi4905 12 85963950 to 85964200 250 CpG island CpG island 4905
Tssr117111 12 85973677 to 85973686 9 - TSS region transcription start site region 117111
Tssr114442 12 85987964 to 85987970 6 + TSS region transcription start site region 114442
Tssr117112 12 86042787 to 86042809 22 - TSS region transcription start site region 117112
D12Mit138 12 86055125 to 86055274 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 138
Tgfb3 12 86056745 to 86079041 22296 - protein coding gene transforming growth factor, beta 3
Tssr114443 12 86060963 to 86060989 26 + TSS region transcription start site region 114443
Gm37804 12 86069173 to 86069779 606 + unclassified gene predicted gene, 37804
Gm48008 12 86078644 to 86079754 1110 + unclassified non-coding RNA gene predicted gene, 48008
Cpgi4906 12 86078684 to 86079023 339 CpG island CpG island 4906
Tssr117113 12 86078800 to 86078804 4 - TSS region transcription start site region 117113
Tssr117114 12 86078903 to 86078941 38 - TSS region transcription start site region 117114
Tssr117115 12 86079019 to 86079035 16 - TSS region transcription start site region 117115
Cpgi4907 12 86079269 to 86079720 451 CpG island CpG island 4907
Cpgi4908 12 86082457 to 86082866 409 CpG island CpG island 4908
Ift43 12 86082541 to 86162459 79918 + protein coding gene intraflagellar transport 43
Tssr114444 12 86082555 to 86082603 48 + TSS region transcription start site region 114444
D12Mit206 12 86121555 to 86121661 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 206