Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:85468600-85728607

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr117084 12 85468642 to 85468651 9 - TSS region transcription start site region 117084
Tssr117085 12 85468663 to 85468668 5 - TSS region transcription start site region 117085
Tssr114394 12 85468855 to 85468867 12 + TSS region transcription start site region 114394
Tssr114395 12 85468944 to 85468965 21 + TSS region transcription start site region 114395
Tssr114396 12 85468973 to 85468988 15 + TSS region transcription start site region 114396
Tssr114397 12 85469007 to 85469014 7 + TSS region transcription start site region 114397
Tssr117086 12 85471868 to 85471891 23 - TSS region transcription start site region 117086
Cpgi4897 12 85472046 to 85472594 548 CpG island CpG island 4897
Tssr117087 12 85472188 to 85472203 15 - TSS region transcription start site region 117087
Tssr3895 12 85472324 to 85472345 21 + TSS region transcription start site region 3895
Tssr114398 12 85472357 to 85472372 15 + TSS region transcription start site region 114398
Tssr117088 12 85473348 to 85473351 3 - TSS region transcription start site region 117088
Cpgi4898 12 85473440 to 85475195 1755 CpG island CpG island 4898
Tssr114399 12 85473883 to 85473896 13 + TSS region transcription start site region 114399
Fos 12 85473901 to 85477269 3368 + protein coding gene FBJ osteosarcoma oncogene
Tssr114400 12 85474302 to 85474307 5 + TSS region transcription start site region 114400
Tssr3896 12 85474610 to 85474634 24 + TSS region transcription start site region 3896
Tssr114401 12 85474689 to 85474714 25 + TSS region transcription start site region 114401
Tssr114402 12 85474717 to 85474739 22 + TSS region transcription start site region 114402
Tssr114403 12 85475585 to 85475596 11 + TSS region transcription start site region 114403
Tssr3897 12 85475790 to 85475796 6 + TSS region transcription start site region 3897
Tssr117089 12 85475936 to 85475973 37 - TSS region transcription start site region 117089
Tssr114404 12 85476487 to 85476495 8 + TSS region transcription start site region 114404
Tssr114405 12 85476593 to 85476649 56 + TSS region transcription start site region 114405
Tssr3898 12 85476662 to 85476692 30 - TSS region transcription start site region 3898
Tssr3899 12 85476724 to 85476764 40 - TSS region transcription start site region 3899
Tssr117090 12 85477265 to 85477273 8 - TSS region transcription start site region 117090
D12Mit95 12 85478050 to 85478282 232 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 95
Tssr117091 12 85485791 to 85485807 16 - TSS region transcription start site region 117091
Cpgi4899 12 85485815 to 85486474 659 CpG island CpG island 4899
Tssr117092 12 85485928 to 85485939 11 - TSS region transcription start site region 117092
Tssr117093 12 85485955 to 85485966 11 - TSS region transcription start site region 117093
Tssr117094 12 85485980 to 85485994 14 - TSS region transcription start site region 117094
Tssr114406 12 85486229 to 85486249 20 + TSS region transcription start site region 114406
Tssr114407 12 85486271 to 85486290 19 + TSS region transcription start site region 114407
Cpgi4900 12 85486823 to 85487129 306 CpG island CpG island 4900
Tssr3900 12 85487841 to 85487853 12 - TSS region transcription start site region 3900
Tssr114408 12 85524653 to 85524664 11 + TSS region transcription start site region 114408
Tssr114409 12 85524669 to 85524683 14 + TSS region transcription start site region 114409
Tssr114410 12 85524689 to 85524713 24 + TSS region transcription start site region 114410
Tssr114411 12 85524715 to 85524742 27 + TSS region transcription start site region 114411
Tssr114412 12 85524831 to 85524841 10 + TSS region transcription start site region 114412
Gm32296 12 85529551 to 85541913 12362 + lincRNA gene predicted gene, 32296
D12Mit161 12 85561012 to 85561109 97 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 161
Gm32348 12 85569331 to 85585379 16048 + lncRNA gene predicted gene, 32348
D12Mit204 12 85580104 to 85580269 165 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 204
Gm47863 12 85597019 to 85599191 2172 - bidirectional promoter lncRNA gene predicted gene, 47863
Tssr114413 12 85598240 to 85598275 35 + TSS region transcription start site region 114413
Tssr114414 12 85598287 to 85598308 21 + TSS region transcription start site region 114414
Tssr114415 12 85598402 to 85598438 36 + TSS region transcription start site region 114415
Cpgi4901 12 85598530 to 85600335 1805 CpG island CpG island 4901
Tssr114416 12 85598600 to 85598607 7 + TSS region transcription start site region 114416
Tssr114417 12 85598707 to 85598735 28 + TSS region transcription start site region 114417
Jdp2 12 85599027 to 85639878 40851 + protein coding gene Jun dimerization protein 2
Tssr114418 12 85599047 to 85599090 43 + TSS region transcription start site region 114418
Tssr117095 12 85599181 to 85599243 62 - TSS region transcription start site region 117095
Tssr114419 12 85599350 to 85599362 12 + TSS region transcription start site region 114419
Tssr114420 12 85599388 to 85599407 19 + TSS region transcription start site region 114420
Tssr114421 12 85608292 to 85608304 12 + TSS region transcription start site region 114421
Tssr114422 12 85608322 to 85608340 18 + TSS region transcription start site region 114422
Tssr114423 12 85614387 to 85614390 3 + TSS region transcription start site region 114423
Tssr117096 12 85639021 to 85639046 25 - TSS region transcription start site region 117096
Tssr114424 12 85639541 to 85639560 19 + TSS region transcription start site region 114424
Gm33312 12 85662442 to 85662868 426 + pseudogene predicted gene, 33312
Tssr114425 12 85686648 to 85686702 54 + TSS region transcription start site region 114425
Tssr114426 12 85686713 to 85686728 15 + TSS region transcription start site region 114426
Batf 12 85686720 to 85709087 22367 + protein coding gene basic leucine zipper transcription factor, ATF-like
Cpgi4902 12 85705466 to 85705890 424 CpG island CpG island 4902
Tssr117097 12 85705612 to 85705618 6 - TSS region transcription start site region 117097
Tssr117098 12 85705635 to 85705674 39 - TSS region transcription start site region 117098
Tssr114427 12 85705980 to 85705983 3 + TSS region transcription start site region 114427
Tssr114428 12 85715256 to 85715258 2 + TSS region transcription start site region 114428
n-R5s64 12 85718477 to 85718595 118 - rRNA gene nuclear encoded rRNA 5S 64
Gm47285 12 85718503 to 85718563 60 - miRNA gene predicted gene, 47285
Gm47901 12 85728457 to 85728719 262 + pseudogene predicted gene, 47901