Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:84830778-85372347

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ltbp2 12 84783212 to 84876532 93320 - protein coding gene latent transforming growth factor beta binding protein 2
Tssr114365 12 84855441 to 84855471 30 + TSS region transcription start site region 114365
D12Mit228 12 84859192 to 84859295 103 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 228
D12Mit94 12 84859199 to 84859340 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 94
Cpgi4883 12 84875526 to 84877058 1532 CpG island CpG island 4883
D030025P21Rik 12 84875802 to 84879755 3953 + antisense lncRNA gene RIKEN cDNA D030025P21 gene
Tssr117040 12 84876161 to 84876175 14 - TSS region transcription start site region 117040
Tssr117041 12 84876436 to 84876445 9 - TSS region transcription start site region 117041
Tssr117042 12 84876446 to 84876467 21 - TSS region transcription start site region 117042
Tssr117043 12 84876470 to 84876474 4 - TSS region transcription start site region 117043
Tssr117044 12 84876483 to 84876497 14 - TSS region transcription start site region 117044
Tssr117045 12 84881442 to 84881445 3 - TSS region transcription start site region 117045
Gm48709 12 84881824 to 84889276 7452 + lincRNA gene predicted gene, 48709
Arel1 12 84918148 to 84970886 52738 - protein coding gene apoptosis resistant E3 ubiquitin protein ligase 1
Gm17139 12 84918148 to 84919238 1090 + antisense lncRNA gene predicted gene 17139
Tssr114366 12 84922321 to 84922338 17 + TSS region transcription start site region 114366
Gm17193 12 84922542 to 84923512 970 - sense intronic lncRNA gene predicted gene 17193
Tssr117046 12 84946921 to 84946923 2 - TSS region transcription start site region 117046
Tssr117047 12 84951141 to 84951146 5 - TSS region transcription start site region 117047
Tssr117048 12 84951293 to 84951296 3 - TSS region transcription start site region 117048
Tssr117049 12 84959558 to 84959561 3 - TSS region transcription start site region 117049
Cpgi4884 12 84970265 to 84971062 797 CpG island CpG island 4884
Tssr117050 12 84970814 to 84970884 70 - TSS region transcription start site region 117050
Tssr114367 12 84970904 to 84970950 46 + TSS region transcription start site region 114367
Fcf1 12 84970930 to 84983303 12373 + protein coding gene FCF1 rRNA processing protein
Cpgi4885 12 84996150 to 84997098 948 CpG island CpG island 4885
Tssr114368 12 84996309 to 84996419 110 + TSS region transcription start site region 114368
Ylpm1 12 84996321 to 85070515 74194 + protein coding gene YLP motif containing 1
Tssr114369 12 84996436 to 84996441 5 + TSS region transcription start site region 114369
Tssr114370 12 84996469 to 84996480 11 + TSS region transcription start site region 114370
Tssr114371 12 84996487 to 84996496 9 + TSS region transcription start site region 114371
Tssr114372 12 84997015 to 84997026 11 + TSS region transcription start site region 114372
Tssr114373 12 85013021 to 85013061 40 + TSS region transcription start site region 114373
Tssr114374 12 85029953 to 85029956 3 + TSS region transcription start site region 114374
Prox2os 12 85086374 to 85088228 1854 + antisense lncRNA gene prospero homeobox 2 opposite strand
Prox2 12 85086385 to 85110759 24374 - protein coding gene prospero homeobox 2
Tssr117051 12 85097080 to 85097091 11 - TSS region transcription start site region 117051
D12Mit257 12 85100423 to 85100512 89 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 257
Gm38355 12 85100778 to 85102347 1569 - unclassified gene predicted gene, 38355
Cpgi4886 12 85110407 to 85111549 1142 CpG island CpG island 4886
Dlst 12 85110821 to 85134091 23270 + protein coding gene dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
Tssr114375 12 85110850 to 85110866 16 + TSS region transcription start site region 114375
Tssr114376 12 85110873 to 85110890 17 + TSS region transcription start site region 114376
Tssr114377 12 85111161 to 85111176 15 + TSS region transcription start site region 114377
Tssr114378 12 85122051 to 85122075 24 + TSS region transcription start site region 114378
Rps6kl1 12 85135249 to 85151264 16015 - protein coding gene ribosomal protein S6 kinase-like 1
Tssr117052 12 85138702 to 85138732 30 - TSS region transcription start site region 117052
Tssr117053 12 85138733 to 85138743 10 - TSS region transcription start site region 117053
Tssr117054 12 85138752 to 85138764 12 - TSS region transcription start site region 117054
Tssr117055 12 85140449 to 85140482 33 - TSS region transcription start site region 117055
Cpgi4887 12 85150811 to 85151330 519 CpG island CpG island 4887
Tssr117056 12 85151213 to 85151260 47 - TSS region transcription start site region 117056
Tssr117057 12 85151264 to 85151275 11 - TSS region transcription start site region 117057
Pgf 12 85166637 to 85177785 11148 - protein coding gene placental growth factor
Cpgi4888 12 85169370 to 85169586 216 CpG island CpG island 4888
Cpgi4889 12 85177137 to 85177671 534 CpG island CpG island 4889
Tssr117058 12 85177288 to 85177306 18 - TSS region transcription start site region 117058
Gm45930 12 85187514 to 85187805 291 - pseudogene predicted gene, 45930
Tssr117059 12 85187846 to 85187862 16 - TSS region transcription start site region 117059
Tssr114379 12 85199648 to 85199650 2 + TSS region transcription start site region 114379
Cpgi4890 12 85219040 to 85220140 1100 CpG island CpG island 4890
Tssr114380 12 85219475 to 85219546 71 + TSS region transcription start site region 114380
Eif2b2 12 85219481 to 85226628 7147 + protein coding gene eukaryotic translation initiation factor 2B, subunit 2 beta
Mlh3 12 85234520 to 85270599 36079 - protein coding gene mutL homolog 3
Mir6938 12 85245923 to 85245985 62 - miRNA gene microRNA 6938
Gm46369 12 85255527 to 85255927 400 + pseudogene predicted gene, 46369
Cpgi4891 12 85270305 to 85270814 509 CpG island CpG island 4891
Tssr117060 12 85270585 to 85270608 23 - TSS region transcription start site region 117060
Tssr117061 12 85270612 to 85270643 31 - TSS region transcription start site region 117061
Acyp1 12 85272398 to 85280447 8049 - protein coding gene acylphosphatase 1, erythrocyte (common) type
Cpgi4892 12 85279756 to 85280548 792 CpG island CpG island 4892
Tssr117062 12 85280342 to 85280347 5 - TSS region transcription start site region 117062
Tssr117063 12 85280361 to 85280435 74 - TSS region transcription start site region 117063
Tssr3890 12 85281340 to 85281344 4 + TSS region transcription start site region 3890
Cpgi4893 12 85288257 to 85288838 581 CpG island CpG island 4893
Tssr117064 12 85288419 to 85288427 8 - TSS region transcription start site region 117064
Zc2hc1c 12 85288591 to 85299358 10767 + protein coding gene zinc finger, C2HC-type containing 1C
Tssr114381 12 85288670 to 85288712 42 + TSS region transcription start site region 114381
Tssr114382 12 85289632 to 85289660 28 + TSS region transcription start site region 114382
Nek9 12 85299514 to 85339362 39848 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 9
Tssr117065 12 85331499 to 85331502 3 - TSS region transcription start site region 117065
Cpgi4894 12 85338799 to 85339669 870 CpG island CpG island 4894
Tssr117066 12 85339316 to 85339327 11 - TSS region transcription start site region 117066
Tssr117067 12 85339346 to 85339391 45 - TSS region transcription start site region 117067
Tssr114383 12 85339430 to 85339448 18 + TSS region transcription start site region 114383
Tssr117068 12 85339498 to 85339532 34 - TSS region transcription start site region 117068
Tssr114384 12 85339696 to 85339701 5 + TSS region transcription start site region 114384
Tmed10 12 85340614 to 85374717 34103 - protein coding gene transmembrane p24 trafficking protein 10
Tssr117069 12 85341573 to 85341586 13 - TSS region transcription start site region 117069
Tssr117070 12 85341607 to 85341620 13 - TSS region transcription start site region 117070
Tssr117071 12 85344452 to 85344458 6 - TSS region transcription start site region 117071
Tssr117072 12 85344467 to 85344495 28 - TSS region transcription start site region 117072
Tssr117073 12 85350553 to 85350554 1 - TSS region transcription start site region 117073
Tssr117074 12 85350580 to 85350585 5 - TSS region transcription start site region 117074
Tssr117075 12 85350625 to 85350630 5 - TSS region transcription start site region 117075
Tssr114385 12 85351039 to 85351062 23 + TSS region transcription start site region 114385
Tssr117076 12 85351125 to 85351157 32 - TSS region transcription start site region 117076
Gm47820 12 85356584 to 85357177 593 + pseudogene predicted gene, 47820
Gm47817 12 85360493 to 85363645 3152 - unclassified gene predicted gene, 47817