Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:77563587-78933591

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35240 12 77553347 to 77569709 16362 + lincRNA gene predicted gene, 35240
Gm48196 12 77577094 to 77577383 289 + pseudogene predicted gene, 48196
Gm4864 12 77623549 to 77625009 1460 - pseudogene predicted gene 4864
Tssr116788 12 77625039 to 77625042 3 - TSS region transcription start site region 116788
4930458K08Rik 12 77683061 to 77689491 6430 + lincRNA gene RIKEN cDNA 4930458K08 gene
Gm35440 12 77749899 to 77786616 36717 + lncRNA gene predicted gene, 35440
Gm35488 12 77789877 to 77812835 22958 - lncRNA gene predicted gene, 35488
Gm24070 12 77814680 to 77814809 129 - snoRNA gene predicted gene, 24070
Gm8219 12 77819582 to 77819823 241 + pseudogene predicted gene 8219
Pbft6 12 78158653 to 78158653 0 QTL percent body fat 6
Gm24994 12 78165546 to 78165666 120 + snoRNA gene predicted gene, 24994
Tssr114034 12 78194225 to 78194238 13 + TSS region transcription start site region 114034
Gm6657 12 78194242 to 78209029 14787 + protein coding gene predicted gene 6657
Tssr114035 12 78197050 to 78197061 11 + TSS region transcription start site region 114035
Tssr114036 12 78197072 to 78197086 14 + TSS region transcription start site region 114036
Gm48226 12 78222286 to 78226525 4239 - bidirectional promoter lncRNA gene predicted gene, 48226
Cpgi4793 12 78225774 to 78227790 2016 CpG island CpG island 4793
Tssr114037 12 78226349 to 78226360 11 + TSS region transcription start site region 114037
Tssr114038 12 78226370 to 78226414 44 + TSS region transcription start site region 114038
Gphn 12 78226379 to 78684772 458393 + protein coding gene gephyrin
Tssr114039 12 78226418 to 78226419 1 + TSS region transcription start site region 114039
Tssr114040 12 78226429 to 78226440 11 + TSS region transcription start site region 114040
Tssr114041 12 78226586 to 78226620 34 + TSS region transcription start site region 114041
Tssr114042 12 78226627 to 78226652 25 + TSS region transcription start site region 114042
Tssr114043 12 78226669 to 78226680 11 + TSS region transcription start site region 114043
Tssr114044 12 78226685 to 78226710 25 + TSS region transcription start site region 114044
Tssr114045 12 78226712 to 78226773 61 + TSS region transcription start site region 114045
Tssr114046 12 78227559 to 78227562 3 + TSS region transcription start site region 114046
Tssr114047 12 78230498 to 78230502 4 + TSS region transcription start site region 114047
D130095D21Rik 12 78248581 to 78249905 1324 unclassified gene RIKEN cDNA D130095D21 gene
Tssr114048 12 78248587 to 78248591 4 + TSS region transcription start site region 114048
Gm18899 12 78255890 to 78256435 545 - pseudogene predicted gene, 18899
Tssr116789 12 78256504 to 78256520 16 - TSS region transcription start site region 116789
Gm48225 12 78261293 to 78266375 5082 + unclassified gene predicted gene, 48225
Tssr116790 12 78299079 to 78299082 3 - TSS region transcription start site region 116790
Tssr114049 12 78303640 to 78303659 19 + TSS region transcription start site region 114049
Tssr114050 12 78350906 to 78350929 23 + TSS region transcription start site region 114050
Tssr114051 12 78351035 to 78351072 37 + TSS region transcription start site region 114051
Tssr114052 12 78356731 to 78356748 17 + TSS region transcription start site region 114052
Tssr114053 12 78356777 to 78356784 7 + TSS region transcription start site region 114053
4633402D09Rik 12 78362219 to 78365396 3177 unclassified gene RIKEN cDNA 4633402D09 gene
Gm48224 12 78380258 to 78380621 363 - pseudogene predicted gene, 48224
Gm48231 12 78398135 to 78400540 2405 + unclassified gene predicted gene, 48231
Gm48230 12 78441595 to 78446746 5151 + unclassified gene predicted gene, 48230
Tssr114054 12 78481317 to 78481323 6 + TSS region transcription start site region 114054
Tssr114055 12 78486862 to 78486868 6 + TSS region transcription start site region 114055
A230092J17Rik 12 78495906 to 78497622 1716 unclassified gene RIKEN cDNA A230092J17 gene
Tssr114056 12 78691495 to 78691512 17 + TSS region transcription start site region 114056
Tssr114057 12 78691516 to 78691540 24 + TSS region transcription start site region 114057
Fam71d 12 78691535 to 78734516 42981 + protein coding gene family with sequence similarity 71, member D
Tssr114058 12 78691651 to 78691690 39 + TSS region transcription start site region 114058
Tssr114059 12 78723540 to 78723543 3 + TSS region transcription start site region 114059
Cpgi4794 12 78748317 to 78749717 1400 CpG island CpG island 4794
Tssr114060 12 78748865 to 78748920 55 + TSS region transcription start site region 114060
Mpp5 12 78748910 to 78840714 91804 + protein coding gene membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
Tssr114061 12 78748955 to 78748971 16 + TSS region transcription start site region 114061
Tssr114062 12 78748996 to 78749019 23 + TSS region transcription start site region 114062
Tssr114063 12 78749027 to 78749041 14 + TSS region transcription start site region 114063
Tssr116791 12 78749589 to 78749600 11 - TSS region transcription start site region 116791
Gm25225 12 78752687 to 78752788 101 - snRNA gene predicted gene, 25225
Tssr114064 12 78802888 to 78802911 23 + TSS region transcription start site region 114064
Tssr116792 12 78842576 to 78842592 16 - TSS region transcription start site region 116792
Atp6v1d 12 78842982 to 78861638 18656 - protein coding gene ATPase, H+ transporting, lysosomal V1 subunit D
Tssr116793 12 78845270 to 78845310 40 - TSS region transcription start site region 116793
Tssr116794 12 78846799 to 78846802 3 - TSS region transcription start site region 116794
Tssr116795 12 78857349 to 78857352 3 - TSS region transcription start site region 116795
Tssr114065 12 78861024 to 78861053 29 + TSS region transcription start site region 114065
Cpgi4795 12 78861074 to 78862477 1403 CpG island CpG island 4795
Tssr116796 12 78861466 to 78861609 143 - TSS region transcription start site region 116796
Tssr116797 12 78861610 to 78861617 7 - TSS region transcription start site region 116797
Tssr116798 12 78861636 to 78861641 5 - TSS region transcription start site region 116798
Tssr114066 12 78861678 to 78861688 10 + TSS region transcription start site region 114066
Tssr114067 12 78861693 to 78861749 56 + TSS region transcription start site region 114067
Tssr114068 12 78862025 to 78862071 46 + TSS region transcription start site region 114068
Eif2s1 12 78862072 to 78887010 24938 + protein coding gene eukaryotic translation initiation factor 2, subunit 1 alpha
Tssr114069 12 78862099 to 78862113 14 + TSS region transcription start site region 114069
Tssr114070 12 78862539 to 78862554 15 + TSS region transcription start site region 114070
Tssr114071 12 78887711 to 78887736 25 + TSS region transcription start site region 114071
Plek2 12 78888691 to 78906964 18273 - protein coding gene pleckstrin 2
Cpgi4796 12 78906661 to 78907262 601 CpG island CpG island 4796
Tssr116799 12 78906929 to 78906970 41 - TSS region transcription start site region 116799
Tssr116800 12 78908375 to 78908387 12 - TSS region transcription start site region 116800
Gm46359 12 78910285 to 78946524 36239 + lncRNA gene predicted gene, 46359
Tssr114072 12 78911930 to 78911933 3 + TSS region transcription start site region 114072
Cpgi4797 12 78911953 to 78912354 401 CpG island CpG island 4797
Gm46360 12 78928859 to 78940474 11615 + lncRNA gene predicted gene, 46360