Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:73913968-75693971

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hif1a 12 73901375 to 73947530 46155 + protein coding gene hypoxia inducible factor 1, alpha subunit
Tssr113848 12 73919346 to 73919356 10 + TSS region transcription start site region 113848
Tssr113849 12 73923102 to 73923105 3 + TSS region transcription start site region 113849
Tssr113850 12 73923239 to 73923250 11 + TSS region transcription start site region 113850
Tssr113851 12 73927363 to 73927375 12 + TSS region transcription start site region 113851
Tssr113852 12 73927412 to 73927423 11 + TSS region transcription start site region 113852
Tssr113853 12 73928197 to 73928211 14 + TSS region transcription start site region 113853
Tssr113854 12 73930699 to 73930711 12 + TSS region transcription start site region 113854
Tssr113855 12 73931560 to 73931571 11 + TSS region transcription start site region 113855
Gm15283 12 73934724 to 73952524 17800 - antisense lncRNA gene predicted gene 15283
Tssr113856 12 73936200 to 73936223 23 + TSS region transcription start site region 113856
Snapc1l 12 73937653 to 73968375 30722 + protein coding gene small nuclear RNA activating complex, polypeptide 1 like
Tssr113857 12 73937659 to 73937671 12 + TSS region transcription start site region 113857
Tssr113858 12 73937716 to 73937732 16 + TSS region transcription start site region 113858
Tssr113859 12 73940544 to 73940574 30 + TSS region transcription start site region 113859
Tssr113860 12 73940583 to 73940595 12 + TSS region transcription start site region 113860
Tssr113861 12 73941696 to 73941738 42 + TSS region transcription start site region 113861
Tssr113862 12 73941754 to 73941782 28 + TSS region transcription start site region 113862
Tssr113863 12 73941790 to 73941809 19 + TSS region transcription start site region 113863
Tssr113864 12 73941824 to 73941831 7 + TSS region transcription start site region 113864
Tssr113865 12 73941969 to 73941996 27 + TSS region transcription start site region 113865
Tssr113866 12 73942048 to 73942065 17 + TSS region transcription start site region 113866
Tssr113867 12 73942255 to 73942266 11 + TSS region transcription start site region 113867
Tssr113868 12 73945660 to 73945674 14 + TSS region transcription start site region 113868
Tssr113869 12 73945683 to 73945716 33 + TSS region transcription start site region 113869
Tssr113870 12 73945762 to 73945786 24 + TSS region transcription start site region 113870
Tssr113871 12 73945787 to 73945807 20 + TSS region transcription start site region 113871
Tssr113872 12 73946030 to 73946048 18 + TSS region transcription start site region 113872
Tssr113873 12 73946283 to 73946300 17 + TSS region transcription start site region 113873
Tssr113874 12 73946311 to 73946328 17 + TSS region transcription start site region 113874
Cpgi4762 12 73949633 to 73950105 472 CpG island CpG island 4762
Tssr116669 12 73949779 to 73949828 49 - TSS region transcription start site region 116669
Tssr116670 12 73949831 to 73949852 21 - TSS region transcription start site region 116670
Tssr113875 12 73961082 to 73961088 6 + TSS region transcription start site region 113875
S100a11-ps 12 73961148 to 73961447 299 + pseudogene S100 calcium binding protein A11, pseudogene
Cpgi4763 12 73964292 to 73965102 810 CpG island CpG island 4763
Snapc1 12 73964477 to 73985830 21353 + protein coding gene small nuclear RNA activating complex, polypeptide 1
Tssr113876 12 73964481 to 73964542 61 + TSS region transcription start site region 113876
Tssr113877 12 73964544 to 73964563 19 + TSS region transcription start site region 113877
D12Mit33 12 73995685 to 73995827 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 33
Cpgi4764 12 73997345 to 73998414 1069 CpG island CpG island 4764
Syt16 12 73997610 to 74267916 270306 + protein coding gene synaptotagmin XVI
Tssr113878 12 73997736 to 73997744 8 + TSS region transcription start site region 113878
Tssr113879 12 73997749 to 73997817 68 + TSS region transcription start site region 113879
Tssr116671 12 74082100 to 74082115 15 - TSS region transcription start site region 116671
Tssr113880 12 74093216 to 74093225 9 + TSS region transcription start site region 113880
Tssr3860 12 74093325 to 74093330 5 + TSS region transcription start site region 3860
Gm40889 12 74140536 to 74146763 6227 + lncRNA gene predicted gene, 40889
Tssr113881 12 74208359 to 74208360 1 + TSS region transcription start site region 113881
Gm29587 12 74222498 to 74235140 12642 - antisense lncRNA gene predicted gene 29587
D12Dcr6 12 74233818 to 74233921 103 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 6
Cpgi4765 12 74283850 to 74284748 898 CpG island CpG island 4765
Tssr113882 12 74284271 to 74284310 39 + TSS region transcription start site region 113882
1700086L19Rik 12 74284276 to 74295950 11674 + lincRNA gene RIKEN cDNA 1700086L19 gene
Tssr113883 12 74284318 to 74284330 12 + TSS region transcription start site region 113883
Tssr113884 12 74284348 to 74284353 5 + TSS region transcription start site region 113884
Tssr113885 12 74296692 to 74296697 5 + TSS region transcription start site region 113885
Tssr113886 12 74296858 to 74296861 3 + TSS region transcription start site region 113886
Dbpht2 12 74297474 to 74300468 2994 + lincRNA gene DNA binding protein with his-thr domain
Tssr113887 12 74298323 to 74298334 11 + TSS region transcription start site region 113887
Tssr113888 12 74298778 to 74298789 11 + TSS region transcription start site region 113888
Gm34552 12 74314201 to 74317162 2961 - lincRNA gene predicted gene, 34552
Gm11042 12 74315110 to 74316394 1284 - protein coding gene predicted gene 11042
Tssr116672 12 74317074 to 74317118 44 - TSS region transcription start site region 116672
Tssr113889 12 74346211 to 74346216 5 + TSS region transcription start site region 113889
Gm9544 12 74346340 to 74348821 2481 + pseudogene predicted gene 9544
Gm47618 12 74593652 to 74594100 448 - pseudogene predicted gene, 47618
Gm47619 12 74705246 to 74705728 482 - pseudogene predicted gene, 47619
Tssr113890 12 74803865 to 74803875 10 + TSS region transcription start site region 113890
Cpgi4766 12 74803933 to 74804502 569 CpG island CpG island 4766
Tssr116673 12 74803968 to 74803971 3 - TSS region transcription start site region 116673
Tssr113891 12 74804137 to 74804179 42 + TSS region transcription start site region 113891
Tssr113892 12 74804220 to 74804222 2 + TSS region transcription start site region 113892
Tssr113893 12 74804270 to 74804281 11 + TSS region transcription start site region 113893
Tssr113894 12 74804323 to 74804343 20 + TSS region transcription start site region 113894
Tssr113895 12 74804381 to 74804415 34 + TSS region transcription start site region 113895
Gm39473 12 74825300 to 74827351 2051 + lincRNA gene predicted gene, 39473
4930442G10Rik 12 74842738 to 74849666 6928 + lincRNA gene RIKEN cDNA 4930442G10 gene
D12Mit202 12 74865419 to 74865538 119 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 202
Tssr116674 12 74889978 to 74889996 18 - TSS region transcription start site region 116674
Tssr116675 12 74890090 to 74890111 21 - TSS region transcription start site region 116675
Kcnh5 12 74897220 to 75177332 280112 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 5
Tssr3861 12 74968258 to 74968260 2 + TSS region transcription start site region 3861
Cpgi4767 12 75176381 to 75177533 1152 CpG island CpG island 4767
Tssr116676 12 75176776 to 75176808 32 - TSS region transcription start site region 116676
Tssr116677 12 75177325 to 75177359 34 - TSS region transcription start site region 116677
D12Mit175 12 75187876 to 75188016 140 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 175
Tssr113896 12 75220339 to 75220341 2 + TSS region transcription start site region 113896
Tssr116678 12 75221387 to 75221388 1 - TSS region transcription start site region 116678
D12Mit287 12 75249564 to 75249686 122 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 287
Tssr113897 12 75277715 to 75277723 8 + TSS region transcription start site region 113897
Tssr113898 12 75308062 to 75308079 17 + TSS region transcription start site region 113898
Tssr113899 12 75308308 to 75308317 9 + TSS region transcription start site region 113899
Rhoj 12 75308322 to 75401456 93134 + protein coding gene ras homolog family member J
Tssr113900 12 75308339 to 75308358 19 + TSS region transcription start site region 113900
Tssr113901 12 75308387 to 75308408 21 + TSS region transcription start site region 113901
Tssr113902 12 75308416 to 75308434 18 + TSS region transcription start site region 113902
Tssr113903 12 75308439 to 75308450 11 + TSS region transcription start site region 113903
Tssr113904 12 75308526 to 75308544 18 + TSS region transcription start site region 113904
Tssr3862 12 75308548 to 75308562 14 + TSS region transcription start site region 3862
Tssr113905 12 75308595 to 75308606 11 + TSS region transcription start site region 113905
Tssr113906 12 75308627 to 75308634 7 + TSS region transcription start site region 113906
Tssr113907 12 75308652 to 75308671 19 + TSS region transcription start site region 113907
Cpgi4768 12 75308676 to 75309158 482 CpG island CpG island 4768
C230007H23Rik 12 75337902 to 75342120 4218 unclassified gene RIKEN cDNA C230007H23 gene
Tssr113908 12 75394001 to 75394031 30 + TSS region transcription start site region 113908
Tssr116679 12 75400224 to 75400234 10 - TSS region transcription start site region 116679
Gphb5 12 75411722 to 75416781 5059 - protein coding gene glycoprotein hormone beta 5
Gm34613 12 75416091 to 75422808 6717 + lncRNA gene predicted gene, 34613
Ppp2r5e 12 75450881 to 75596245 145364 - protein coding gene protein phosphatase 2, regulatory subunit B', epsilon
Tssr116680 12 75483368 to 75483372 4 - TSS region transcription start site region 116680
Gm47690 12 75505800 to 75508745 2945 - unclassified gene predicted gene, 47690
Tssr3863 12 75521510 to 75521513 3 + TSS region transcription start site region 3863
Tssr3864 12 75529262 to 75529265 3 + TSS region transcription start site region 3864
D12Mit226 12 75537627 to 75537747 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 226
Tssr116681 12 75549636 to 75549640 4 - TSS region transcription start site region 116681
Tssr116682 12 75549643 to 75549661 18 - TSS region transcription start site region 116682
Tssr116683 12 75549668 to 75549695 27 - TSS region transcription start site region 116683
D12Mit129 12 75558803 to 75558903 100 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 129
Gm47689 12 75579865 to 75581699 1834 + antisense lncRNA gene predicted gene, 47689
Tssr116684 12 75583432 to 75583436 4 - TSS region transcription start site region 116684
Tssr116685 12 75589542 to 75589544 2 - TSS region transcription start site region 116685
Tssr113909 12 75591357 to 75591363 6 + TSS region transcription start site region 113909
Cpgi4769 12 75595343 to 75596947 1604 CpG island CpG island 4769
Tssr116686 12 75596108 to 75596113 5 - TSS region transcription start site region 116686
Tssr116687 12 75596163 to 75596176 13 - TSS region transcription start site region 116687
Tssr116688 12 75596180 to 75596194 14 - TSS region transcription start site region 116688
Tssr116689 12 75596195 to 75596261 66 - TSS region transcription start site region 116689
Tssr113910 12 75596458 to 75596489 31 + TSS region transcription start site region 113910
Tssr116690 12 75599332 to 75599333 1 - TSS region transcription start site region 116690
Gm34666 12 75609978 to 75616626 6648 - lncRNA gene predicted gene, 34666
Wdr89 12 75630596 to 75669537 38941 - protein coding gene WD repeat domain 89
Rplp2-ps1 12 75630918 to 75631749 831 - pseudogene ribosomal protein, large P2, pseudogene 1
Cpgi4770 12 75631189 to 75631379 190 CpG island CpG island 4770
Tssr116691 12 75631200 to 75631228 28 - TSS region transcription start site region 116691
Tssr116692 12 75631327 to 75631360 33 - TSS region transcription start site region 116692
Tssr116693 12 75631371 to 75631380 9 - TSS region transcription start site region 116693
Cpgi4771 12 75669146 to 75670071 925 CpG island CpG island 4771
Tssr116694 12 75669496 to 75669544 48 - TSS region transcription start site region 116694
Gm34717 12 75669725 to 75688264 18539 + lncRNA gene predicted gene, 34717
Tssr113911 12 75669813 to 75669830 17 + TSS region transcription start site region 113911
Tssr113912 12 75669835 to 75669878 43 + TSS region transcription start site region 113912