Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:71071109-72053821

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arid4a 12 71015990 to 71098592 82602 + protein coding gene AT rich interactive domain 4A (RBP1-like)
Tssr113718 12 71074960 to 71074996 36 + TSS region transcription start site region 113718
Tssr113719 12 71097636 to 71097650 14 + TSS region transcription start site region 113719
Cpgi4719 12 71111271 to 71111706 435 CpG island CpG island 4719
Tssr113720 12 71111402 to 71111413 11 + TSS region transcription start site region 113720
Tssr113721 12 71111418 to 71111456 38 + TSS region transcription start site region 113721
Tomm20l 12 71111428 to 71123221 11793 + protein coding gene translocase of outer mitochondrial membrane 20-like
Tssr3857 12 71111457 to 71111461 4 + TSS region transcription start site region 3857
Gm32906 12 71111507 to 71114257 2750 - lncRNA gene predicted gene, 32906
Tssr116577 12 71114060 to 71114076 16 - TSS region transcription start site region 116577
Tssr116578 12 71114077 to 71114100 23 - TSS region transcription start site region 116578
Timm9 12 71123172 to 71136675 13503 - protein coding gene translocase of inner mitochondrial membrane 9
Cpgi4720 12 71136212 to 71136791 579 CpG island CpG island 4720
Tssr116579 12 71136611 to 71136701 90 - TSS region transcription start site region 116579
2700049A03Rik 12 71136848 to 71243303 106455 + protein coding gene RIKEN cDNA 2700049A03 gene
Tssr113722 12 71137157 to 71137160 3 + TSS region transcription start site region 113722
Tssr113723 12 71137170 to 71137221 51 + TSS region transcription start site region 113723
Tssr113724 12 71137225 to 71137242 17 + TSS region transcription start site region 113724
Tssr113725 12 71137593 to 71137601 8 + TSS region transcription start site region 113725
Gm19045 12 71203604 to 71204386 782 - pseudogene predicted gene, 19045
D12Mit92 12 71254593 to 71254732 139 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 92
Gm7959 12 71268744 to 71270357 1613 - pseudogene predicted gene 7959
Cpgi4721 12 71309254 to 71310774 1520 CpG island CpG island 4721
Tssr113726 12 71309858 to 71309874 16 + TSS region transcription start site region 113726
Tssr113727 12 71309876 to 71309910 34 + TSS region transcription start site region 113727
Dact1 12 71309884 to 71320107 10223 + protein coding gene dishevelled-binding antagonist of beta-catenin 1
4930474H06Rik 12 71317621 to 71321660 4039 - unclassified non-coding RNA gene RIKEN cDNA 4930474H06 gene
Cpgi4722 12 71318015 to 71318912 897 CpG island CpG island 4722
Gm33016 12 71337628 to 71342803 5175 + lincRNA gene predicted gene, 33016
Tssr113728 12 71355435 to 71355454 19 + TSS region transcription start site region 113728
Gm40438 12 71355454 to 71362077 6623 + lincRNA gene predicted gene, 40438
Tssr113729 12 71361922 to 71361940 18 + TSS region transcription start site region 113729
1700083H02Rik 12 71383154 to 71384208 1054 - lincRNA gene RIKEN cDNA 1700083H02 gene
Tssr116580 12 71384185 to 71384235 50 - TSS region transcription start site region 116580
Gm17945 12 71460478 to 71461342 864 - pseudogene predicted gene, 17945
D12Mit90 12 71489147 to 71489294 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 90
4930404H11Rik 12 71540607 to 71556133 15526 + lincRNA gene RIKEN cDNA 4930404H11 gene
Gm40439 12 71561109 to 71563821 2712 + lncRNA gene predicted gene, 40439
9630002D21Rik 12 71577931 to 71718589 140658 + lincRNA gene RIKEN cDNA 9630002D21 gene
Gm46356 12 71628835 to 71629661 826 - lncRNA gene predicted gene, 46356
D12Mit273 12 71630105 to 71630211 106 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 273
Gm22959 12 71724652 to 71724954 302 + unclassified non-coding RNA gene predicted gene, 22959
D12Mit91 12 71742842 to 71742993 151 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 91
Gm47555 12 71754050 to 71754385 335 - pseudogene predicted gene, 47555
Gm47556 12 71766786 to 71768000 1214 - pseudogene predicted gene, 47556
Cpgi4723 12 71830705 to 71832136 1431 CpG island CpG island 4723
Tssr113730 12 71831064 to 71831178 114 + TSS region transcription start site region 113730
Daam1 12 71831078 to 71992333 161255 + protein coding gene dishevelled associated activator of morphogenesis 1
Tssr113731 12 71832466 to 71832504 38 + TSS region transcription start site region 113731
Gm7985 12 71846311 to 71847291 980 - pseudogene predicted gene 7985
Gdap5 12 71849197 to 71849584 387 unclassified gene ganglioside-induced differentiation-associated-protein 5
Tssr113732 12 71876033 to 71876064 31 + TSS region transcription start site region 113732
Gm40887 12 71877352 to 71889614 12262 - lncRNA gene predicted gene, 40887
Tssr113733 12 71889451 to 71889466 15 + TSS region transcription start site region 113733
Tssr113734 12 71889501 to 71889515 14 + TSS region transcription start site region 113734
Tssr113735 12 71889538 to 71889556 18 + TSS region transcription start site region 113735
Tssr113736 12 71889713 to 71889723 10 + TSS region transcription start site region 113736
Tssr113737 12 71889726 to 71889740 14 + TSS region transcription start site region 113737
Tssr113738 12 71959657 to 71959659 2 + TSS region transcription start site region 113738
Tssr116581 12 72014529 to 72014530 1 - TSS region transcription start site region 116581
Gm40440 12 72026893 to 72040193 13300 - lncRNA gene predicted gene, 40440
Gm7986 12 72048709 to 72049259 550 - pseudogene predicted gene 7986