Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:55063843-57683885

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278 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq11 12 53108841 to 57229970 4121129 QTL open field activity QTL 11
2700097O09Rik 12 55045661 to 55080110 34449 - protein coding gene RIKEN cDNA 2700097O09 gene
Gm46350 12 55066503 to 55066917 414 - pseudogene predicted gene, 46350
Gm7511 12 55067752 to 55068201 449 - pseudogene predicted gene 7511
Cpgi4614 12 55080079 to 55080710 631 CpG island CpG island 4614
Tssr116330 12 55080098 to 55080121 23 - TSS region transcription start site region 116330
Tssr116331 12 55080130 to 55080139 9 - TSS region transcription start site region 116331
Tssr113479 12 55080214 to 55080235 21 + TSS region transcription start site region 113479
Srp54a 12 55080496 to 55115367 34871 + protein coding gene signal recognition particle 54A
Tssr113480 12 55080528 to 55080560 32 + TSS region transcription start site region 113480
Fam177a 12 55124469 to 55142104 17635 + protein coding gene family with sequence similarity 177, member A
Gm2436 12 55142109 to 55151007 8898 - protein coding gene predicted gene 2436
Gm48340 12 55152450 to 55152854 404 + pseudogene predicted gene, 48340
Srp54b 12 55155104 to 55189213 34109 + protein coding gene signal recognition particle 54B
1700047I17Rik2 12 55199592 to 55217168 17576 + protein coding gene RIKEN cDNA 1700047I17 gene 2
Gm2446 12 55217176 to 55226072 8896 - protein coding gene predicted gene 2446
Gm48352 12 55227514 to 55227918 404 + pseudogene predicted gene, 48352
Srp54c 12 55230168 to 55263836 33668 + protein coding gene signal recognition particle 54C
Gm49376 12 55275381 to 55278714 3333 + pseudogene predicted gene, 49376
Ppp2r3c 12 55280809 to 55303005 22196 - protein coding gene protein phosphatase 2, regulatory subunit B'', gamma
Cpgi4615 12 55302501 to 55303232 731 CpG island CpG island 4615
Tssr116332 12 55302620 to 55302623 3 - TSS region transcription start site region 116332
1110008L16Rik 12 55302637 to 55382492 79855 + protein coding gene RIKEN cDNA 1110008L16 gene
Tssr116333 12 55302645 to 55302725 80 - TSS region transcription start site region 116333
Tssr116334 12 55302737 to 55302746 9 - TSS region transcription start site region 116334
Tssr113481 12 55302744 to 55302784 40 + TSS region transcription start site region 113481
Tssr116335 12 55302767 to 55302778 11 - TSS region transcription start site region 116335
Tssr113482 12 55302824 to 55302864 40 + TSS region transcription start site region 113482
Tssr116336 12 55302959 to 55302968 9 - TSS region transcription start site region 116336
Tssr116337 12 55302974 to 55303014 40 - TSS region transcription start site region 116337
Tssr113483 12 55303241 to 55303284 43 + TSS region transcription start site region 113483
Cpgi4616 12 55321659 to 55321810 151 CpG island CpG island 4616
Tssr113484 12 55361348 to 55361391 43 + TSS region transcription start site region 113484
Tssr116338 12 55376019 to 55376022 3 - TSS region transcription start site region 116338
Tssr113485 12 55377139 to 55377158 19 + TSS region transcription start site region 113485
Tssr113486 12 55377160 to 55377211 51 + TSS region transcription start site region 113486
Psma6 12 55384222 to 55418454 34232 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 6
Tssr113487 12 55384227 to 55384261 34 + TSS region transcription start site region 113487
Tssr113488 12 55384756 to 55384766 10 + TSS region transcription start site region 113488
D730047E02Rik 12 55390269 to 55391501 1232 unclassified gene RIKEN cDNA D730047E02 gene
Tssr116339 12 55391496 to 55391505 9 - TSS region transcription start site region 116339
Rpl18a-ps1 12 55395707 to 55396229 522 - pseudogene ribosomal protein L18A, pseudogene 1
Cpgi4617 12 55398538 to 55399377 839 CpG island CpG island 4617
Tssr116340 12 55398677 to 55398744 67 - TSS region transcription start site region 116340
Tssr113489 12 55398814 to 55398894 80 + TSS region transcription start site region 113489
Tssr113490 12 55398920 to 55398931 11 + TSS region transcription start site region 113490
Tssr113491 12 55399789 to 55399839 50 + TSS region transcription start site region 113491
Tssr113492 12 55410281 to 55410286 5 + TSS region transcription start site region 113492
Tssr113493 12 55410426 to 55410431 5 + TSS region transcription start site region 113493
Cpgi4618 12 55420199 to 55420846 647 CpG island CpG island 4618
Gm2468 12 55423123 to 55423680 557 + pseudogene predicted gene 2468
Gm36571 12 55428879 to 55432788 3909 - lncRNA gene predicted gene, 36571
Tssr113494 12 55446926 to 55446932 6 + TSS region transcription start site region 113494
D12Mit67 12 55451990 to 55452150 160 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 67
Tssr113495 12 55465802 to 55465825 23 + TSS region transcription start site region 113495
Tssr113496 12 55465848 to 55465864 16 + TSS region transcription start site region 113496
Tssr116341 12 55466365 to 55466372 7 - TSS region transcription start site region 116341
Tssr113497 12 55467945 to 55467951 6 + TSS region transcription start site region 113497
Tssr113498 12 55489409 to 55489415 6 + TSS region transcription start site region 113498
Nfkbia 12 55489410 to 55492647 3237 - protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha
Tssr116342 12 55489647 to 55489666 19 - TSS region transcription start site region 116342
Tssr116343 12 55489809 to 55489824 15 - TSS region transcription start site region 116343
Tssr116344 12 55489925 to 55489980 55 - TSS region transcription start site region 116344
Tssr113499 12 55490404 to 55490453 49 + TSS region transcription start site region 113499
Tssr116345 12 55490436 to 55490458 22 - TSS region transcription start site region 116345
Tssr116346 12 55490538 to 55490572 34 - TSS region transcription start site region 116346
Tssr116347 12 55491179 to 55491197 18 - TSS region transcription start site region 116347
Tssr116348 12 55491306 to 55491317 11 - TSS region transcription start site region 116348
Tssr116349 12 55491447 to 55491467 20 - TSS region transcription start site region 116349
Tssr116350 12 55491488 to 55491498 10 - TSS region transcription start site region 116350
Cpgi4619 12 55491563 to 55492861 1298 CpG island CpG island 4619
Tssr116351 12 55491700 to 55491715 15 - TSS region transcription start site region 116351
Tssr116352 12 55491738 to 55491777 39 - TSS region transcription start site region 116352
Tssr116353 12 55491781 to 55491801 20 - TSS region transcription start site region 116353
Tssr116354 12 55492587 to 55492605 18 - TSS region transcription start site region 116354
Tssr113500 12 55492698 to 55492727 29 + TSS region transcription start site region 113500
Gm36634 12 55497721 to 55499951 2230 + lncRNA gene predicted gene, 36634
Tssr113501 12 55507834 to 55507860 26 + TSS region transcription start site region 113501
Cpgi4620 12 55507841 to 55508000 159 CpG island CpG island 4620
Cpgi4621 12 55565154 to 55565682 528 CpG island CpG island 4621
Tssr113502 12 55565188 to 55565257 69 + TSS region transcription start site region 113502
Aldoart2 12 55565239 to 55566896 1657 + protein coding gene aldolase 1 A, retrogene 2
Tssr113503 12 55565261 to 55565267 6 + TSS region transcription start site region 113503
4921516I12Rik 12 55597218 to 55599412 2194 unclassified gene RIKEN cDNA 4921516I12 gene
Cpgi4622 12 55598698 to 55601256 2558 CpG island CpG island 4622
Tssr113504 12 55599424 to 55599429 5 + TSS region transcription start site region 113504
Insm2 12 55599427 to 55602086 2659 + protein coding gene insulinoma-associated 2
Ralgapa1 12 55602896 to 55821167 218271 - protein coding gene Ral GTPase activating protein, alpha subunit 1
D12Mit246 12 55747618 to 55747718 100 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 246
Tssr116355 12 55783317 to 55783318 1 - TSS region transcription start site region 116355
Gm48655 12 55815184 to 55816527 1343 - unclassified gene predicted gene, 48655
Cpgi4623 12 55820216 to 55821373 1157 CpG island CpG island 4623
Gm9812 12 55820611 to 55821580 969 + pseudogene predicted gene 9812
Tssr116356 12 55821021 to 55821028 7 - TSS region transcription start site region 116356
Gm23394 12 55821063 to 55821153 90 - miRNA gene predicted gene, 23394
Tssr116357 12 55821073 to 55821084 11 - TSS region transcription start site region 116357
Tssr116358 12 55821098 to 55821110 12 - TSS region transcription start site region 116358
Tssr116359 12 55821137 to 55821149 12 - TSS region transcription start site region 116359
Tssr116360 12 55821157 to 55821195 38 - TSS region transcription start site region 116360
Tssr116361 12 55821196 to 55821207 11 - TSS region transcription start site region 116361
Cpgi4624 12 55836157 to 55837122 965 CpG island CpG island 4624
Tssr113505 12 55836317 to 55836330 13 + TSS region transcription start site region 113505
Brms1l 12 55836324 to 55869736 33412 + protein coding gene breast cancer metastasis-suppressor 1-like
Tssr113506 12 55836332 to 55836361 29 + TSS region transcription start site region 113506
Tssr113507 12 55836365 to 55836408 43 + TSS region transcription start site region 113507
Tssr113508 12 55847727 to 55847731 4 + TSS region transcription start site region 113508
Cpgi4625 12 55861011 to 55861221 210 CpG island CpG island 4625
Gm22296 12 55910821 to 55910923 102 - snRNA gene predicted gene, 22296
Cpgi4626 12 55916781 to 55917384 603 CpG island CpG island 4626
Tssr3846 12 55961506 to 55961511 5 - TSS region transcription start site region 3846
Gm5183 12 56050533 to 56051161 628 + pseudogene predicted gene 5183
Gm23799 12 56056636 to 56056755 119 - rRNA gene predicted gene, 23799
Cpgi4627 12 56058525 to 56058728 203 CpG island CpG island 4627
Gm5184 12 56189414 to 56191115 1701 + pseudogene predicted gene 5184
Gm36754 12 56235144 to 56239259 4115 - lncRNA gene predicted gene, 36754
Gm47682 12 56246648 to 56254398 7750 - lincRNA gene predicted gene, 47682
Gm25917 12 56252315 to 56252444 129 - snoRNA gene predicted gene, 25917
Tssr113509 12 56253147 to 56253162 15 + TSS region transcription start site region 113509
Tssr113510 12 56253188 to 56253212 24 + TSS region transcription start site region 113510
Tssr113511 12 56253228 to 56253248 20 + TSS region transcription start site region 113511
Gm19990 12 56253243 to 56266381 13138 + lincRNA gene predicted gene, 19990
Tssr113512 12 56253250 to 56253261 11 + TSS region transcription start site region 113512
Gm46351 12 56266003 to 56275945 9942 - lncRNA gene predicted gene, 46351
Gm24685 12 56266920 to 56267204 284 - unclassified non-coding RNA gene predicted gene, 24685
Cpgi4628 12 56275603 to 56275755 152 CpG island CpG island 4628
Tssr116362 12 56275703 to 56275729 26 - TSS region transcription start site region 116362
Tssr116363 12 56275734 to 56275766 32 - TSS region transcription start site region 116363
Cpgi4629 12 56286713 to 56287018 305 CpG island CpG island 4629
Tssr113513 12 56289166 to 56289174 8 + TSS region transcription start site region 113513
Tssr113514 12 56289227 to 56289234 7 + TSS region transcription start site region 113514
Cpgi4630 12 56301913 to 56302191 278 CpG island CpG island 4630
Mbip 12 56328306 to 56345895 17589 - protein coding gene MAP3K12 binding inhibitory protein 1
Cpgi4631 12 56345351 to 56345987 636 CpG island CpG island 4631
Tssr116364 12 56345772 to 56345788 16 - TSS region transcription start site region 116364
Tssr116365 12 56345792 to 56345842 50 - TSS region transcription start site region 116365
Tssr116366 12 56345862 to 56345888 26 - TSS region transcription start site region 116366
Cox6c2 12 56373593 to 56373823 230 - pseudogene cytochrome c oxidase subunit 6C2
Tssr116367 12 56373710 to 56373733 23 - TSS region transcription start site region 116367
Tssr116368 12 56373843 to 56373885 42 - TSS region transcription start site region 116368
Gm18027 12 56409939 to 56410557 618 - pseudogene predicted gene, 18027
Cpgi4632 12 56464293 to 56464575 282 CpG island CpG island 4632
Sfta3-ps 12 56490428 to 56529420 38992 - lncRNA gene surfactant associated 3, pseudogene
Tssr116369 12 56497397 to 56497430 33 - TSS region transcription start site region 116369
Tssr116370 12 56497550 to 56497560 10 - TSS region transcription start site region 116370
Tssr116371 12 56497729 to 56497733 4 - TSS region transcription start site region 116371
Gm47720 12 56498688 to 56500828 2140 - unclassified gene predicted gene, 47720
Tssr116372 12 56513936 to 56513968 32 - TSS region transcription start site region 116372
Cpgi4633 12 56519635 to 56520191 556 CpG island CpG island 4633
Cpgi4634 12 56520916 to 56521393 477 CpG island CpG island 4634
Tssr116373 12 56521340 to 56521351 11 - TSS region transcription start site region 116373
Tssr116374 12 56521388 to 56521397 9 - TSS region transcription start site region 116374
Tssr116375 12 56522185 to 56522198 13 - TSS region transcription start site region 116375
Tssr116376 12 56523254 to 56523266 12 - TSS region transcription start site region 116376
Cpgi4635 12 56528962 to 56529364 402 CpG island CpG island 4635
Tssr116377 12 56529377 to 56529386 9 - TSS region transcription start site region 116377
Tssr116378 12 56529396 to 56529397 1 - TSS region transcription start site region 116378
Tssr116379 12 56529410 to 56529437 27 - TSS region transcription start site region 116379
Tssr116380 12 56529446 to 56529451 5 - TSS region transcription start site region 116380
Tssr116381 12 56529456 to 56529463 7 - TSS region transcription start site region 116381
Tssr3847 12 56529491 to 56529498 7 - TSS region transcription start site region 3847
Tssr116382 12 56529500 to 56529511 11 - TSS region transcription start site region 116382
Tssr116383 12 56529548 to 56529558 10 - TSS region transcription start site region 116383
Nkx2-1 12 56531958 to 56536908 4950 - protein coding gene NK2 homeobox 1
Tssr116384 12 56532900 to 56532912 12 - TSS region transcription start site region 116384
Cpgi4636 12 56532910 to 56535330 2420 CpG island CpG island 4636
Tssr116385 12 56532942 to 56532984 42 - TSS region transcription start site region 116385
Tssr116386 12 56532991 to 56533013 22 - TSS region transcription start site region 116386
Tssr116387 12 56533600 to 56533611 11 - TSS region transcription start site region 116387
Tssr116388 12 56535016 to 56535030 14 - TSS region transcription start site region 116388
Tssr116389 12 56535047 to 56535100 53 - TSS region transcription start site region 116389
Tssr116390 12 56535191 to 56535207 16 - TSS region transcription start site region 116390
Tssr116391 12 56535233 to 56535249 16 - TSS region transcription start site region 116391
Tssr116392 12 56535253 to 56535269 16 - TSS region transcription start site region 116392
Tssr113515 12 56535291 to 56535302 11 + TSS region transcription start site region 113515
Gm26973 12 56535343 to 56607476 72133 + antisense lncRNA gene predicted gene, 26973
Cpgi4637 12 56535584 to 56536894 1310 CpG island CpG island 4637
Tssr116393 12 56535924 to 56535937 13 - TSS region transcription start site region 116393
Tssr116394 12 56535949 to 56535966 17 - TSS region transcription start site region 116394
Tssr116395 12 56535972 to 56535989 17 - TSS region transcription start site region 116395
Tssr116396 12 56535998 to 56536023 25 - TSS region transcription start site region 116396
Tssr116397 12 56536071 to 56536095 24 - TSS region transcription start site region 116397
Tssr116398 12 56536099 to 56536122 23 - TSS region transcription start site region 116398
Tssr116399 12 56536608 to 56536621 13 - TSS region transcription start site region 116399
Tssr116400 12 56536662 to 56536678 16 - TSS region transcription start site region 116400
Tssr116401 12 56536713 to 56536730 17 - TSS region transcription start site region 116401
Tssr116402 12 56536745 to 56536790 45 - TSS region transcription start site region 116402
Tssr116403 12 56536798 to 56536810 12 - TSS region transcription start site region 116403
Tssr116404 12 56536895 to 56536937 42 - TSS region transcription start site region 116404
Cpgi4638 12 56537490 to 56537776 286 CpG island CpG island 4638
Tssr116405 12 56537526 to 56537557 31 - TSS region transcription start site region 116405
Gm25760 12 56551459 to 56551590 131 + snoRNA gene predicted gene, 25760
C87198 12 56591059 to 56594554 3495 + lincRNA gene expressed sequence C87198
Gm38103 12 56609613 to 56610476 863 - unclassified gene predicted gene, 38103
Nkx2-9 12 56611389 to 56613284 1895 - protein coding gene NK2 homeobox 9
Cpgi4639 12 56611581 to 56612443 862 CpG island CpG island 4639
Cpgi4640 12 56612770 to 56613321 551 CpG island CpG island 4640
Tssr116406 12 56613173 to 56613181 8 - TSS region transcription start site region 116406
Tssr116407 12 56613233 to 56613247 14 - TSS region transcription start site region 116407
Tssr116408 12 56613270 to 56613291 21 - TSS region transcription start site region 116408
Tssr116409 12 56613301 to 56613318 17 - TSS region transcription start site region 116409