Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:54320786-55070797

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr113470 12 54343701 to 54343716 15 + TSS region transcription start site region 113470
Tssr113471 12 54343717 to 54343731 14 + TSS region transcription start site region 113471
Tssr113472 12 54343734 to 54343745 11 + TSS region transcription start site region 113472
Tssr113473 12 54343746 to 54343765 19 + TSS region transcription start site region 113473
Gm35895 12 54350824 to 54353264 2440 + lncRNA gene predicted gene, 35895
D12Mit66 12 54351421 to 54351568 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 66
Tssr116296 12 54369305 to 54369355 50 - TSS region transcription start site region 116296
Tssr3844 12 54374353 to 54374358 5 + TSS region transcription start site region 3844
Gm7550 12 54388042 to 54391318 3276 - lincRNA gene predicted gene 7550
Gm46328 12 54400204 to 54405656 5452 + lincRNA gene predicted gene, 46328
Tssr113474 12 54428035 to 54428044 9 + TSS region transcription start site region 113474
Gm47553 12 54428077 to 54428556 479 + pseudogene predicted gene, 47553
Gm7557 12 54429534 to 54430398 864 - pseudogene predicted gene 7557
Tssr116297 12 54459472 to 54459478 6 - TSS region transcription start site region 116297
Gm36213 12 54463133 to 54479471 16338 - lncRNA gene predicted gene, 36213
Gm10465 12 54512421 to 54517079 4658 - lincRNA gene predicted gene 10465
Gm40425 12 54549885 to 54553804 3919 + lncRNA gene predicted gene, 40425
Tssr3845 12 54559233 to 54559246 13 + TSS region transcription start site region 3845
Tssr113475 12 54622530 to 54622575 45 + TSS region transcription start site region 113475
Gm6218 12 54622590 to 54623217 627 + pseudogene predicted gene 6218
D12Mit88 12 54638868 to 54639009 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 88
Sptssa 12 54645392 to 54656573 11181 - protein coding gene serine palmitoyltransferase, small subunit A
Mir1892 12 54645933 to 54646012 79 - miRNA gene microRNA 1892
Ahrq1 12 54649125 to 82619165 27970040 QTL airway hyperresponsiveness QTL 1
D12Mit285 12 54649125 to 54649249 124 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 285
Tssr116298 12 54649871 to 54649877 6 - TSS region transcription start site region 116298
Cpgi4609 12 54656079 to 54656945 866 CpG island CpG island 4609
Tssr116299 12 54656496 to 54656517 21 - TSS region transcription start site region 116299
Tssr113476 12 54656752 to 54656774 22 + TSS region transcription start site region 113476
Tssr113477 12 54656808 to 54656813 5 + TSS region transcription start site region 113477
Gm40884 12 54658820 to 54659907 1087 + lincRNA gene predicted gene, 40884
Gm24971 12 54666677 to 54666786 109 - rRNA gene predicted gene, 24971
Eapp 12 54670340 to 54695897 25557 - protein coding gene E2F-associated phosphoprotein
Gm36262 12 54679311 to 54679809 498 - pseudogene predicted gene, 36262
Gm20947 12 54688934 to 54690288 1354 - pseudogene predicted gene, 20947
Tssr116300 12 54695276 to 54695283 7 - TSS region transcription start site region 116300
Cpgi4610 12 54695429 to 54696159 730 CpG island CpG island 4610
Tssr116301 12 54695786 to 54695797 11 - TSS region transcription start site region 116301
Tssr116302 12 54695813 to 54695828 15 - TSS region transcription start site region 116302
Tssr116303 12 54695829 to 54695884 55 - TSS region transcription start site region 116303
Tssr116304 12 54695885 to 54695893 8 - TSS region transcription start site region 116304
Gm22513 12 54696782 to 54696945 163 + snRNA gene predicted gene, 22513
Rpl31-ps17 12 54701329 to 54701706 377 - pseudogene ribosomal protein L31, pseudogene 17
Tssr116305 12 54701729 to 54701730 1 - TSS region transcription start site region 116305
Gm22634 12 54710308 to 54710471 163 + snRNA gene predicted gene, 22634
Gm23804 12 54714218 to 54714381 163 + snRNA gene predicted gene, 23804
Gm2395 12 54716796 to 54717219 423 + pseudogene predicted gene 2395
Gm25679 12 54719163 to 54719326 163 - snRNA gene predicted gene, 25679
Gm26444 12 54729602 to 54729765 163 + snRNA gene predicted gene, 26444
Gm2412 12 54731716 to 54732141 425 - pseudogene predicted gene 2412
Gm24305 12 54734555 to 54734718 163 - snRNA gene predicted gene, 24305
Tssr116306 12 54734715 to 54734719 4 - TSS region transcription start site region 116306
Gm22317 12 54738459 to 54738622 163 - snRNA gene predicted gene, 22317
Snx6 12 54746349 to 54795703 49354 - protein coding gene sorting nexin 6
Cpgi4611 12 54795095 to 54795974 879 CpG island CpG island 4611
Tssr116307 12 54795660 to 54795696 36 - TSS region transcription start site region 116307
Tssr116308 12 54795698 to 54795714 16 - TSS region transcription start site region 116308
Tssr116309 12 54795717 to 54795724 7 - TSS region transcription start site region 116309
Cfl2 12 54858817 to 54862877 4060 - protein coding gene cofilin 2, muscle
Opfaq8 12 54860868 to 57823799 2962931 QTL open field activity QTL 8
Tssr116310 12 54861082 to 54861099 17 - TSS region transcription start site region 116310
Cpgi4612 12 54862045 to 54863272 1227 CpG island CpG island 4612
Tssr116311 12 54862466 to 54862488 22 - TSS region transcription start site region 116311
Tssr116312 12 54862497 to 54862517 20 - TSS region transcription start site region 116312
1700081N11Rik 12 54862647 to 54863667 1020 + bidirectional promoter lncRNA gene RIKEN cDNA 1700081N11 gene
Tssr116313 12 54862672 to 54862691 19 - TSS region transcription start site region 116313
Tssr116314 12 54862783 to 54862921 138 - TSS region transcription start site region 116314
Tssr113478 12 54862969 to 54862997 28 + TSS region transcription start site region 113478
Tssr116315 12 54863024 to 54863070 46 - TSS region transcription start site region 116315
Tssr116316 12 54863071 to 54863101 30 - TSS region transcription start site region 116316
Tssr116317 12 54867199 to 54867203 4 - TSS region transcription start site region 116317
Tssr116318 12 54892574 to 54892580 6 - TSS region transcription start site region 116318
Baz1a 12 54892989 to 55014348 121359 - protein coding gene bromodomain adjacent to zinc finger domain 1A
Tssr116319 12 54923102 to 54923143 41 - TSS region transcription start site region 116319
Tssr116320 12 54937678 to 54937685 7 - TSS region transcription start site region 116320
D12Dcr2 12 54956752 to 54956859 107 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 2
Gm27014 12 54963064 to 54964200 1136 + pseudogene predicted gene, 27014
Cpgi4613 12 54984551 to 54986641 2090 CpG island CpG island 4613
Gm20403 12 54986158 to 54986529 371 - protein coding gene predicted gene 20403
Tssr116321 12 54986303 to 54986308 5 - TSS region transcription start site region 116321
Tssr116322 12 54986328 to 54986342 14 - TSS region transcription start site region 116322
Tssr116323 12 54986345 to 54986362 17 - TSS region transcription start site region 116323
Tssr116324 12 54986363 to 54986381 18 - TSS region transcription start site region 116324
Gm24296 12 54997072 to 54997177 105 + snRNA gene predicted gene, 24296
Tssr116325 12 54999120 to 54999142 22 - TSS region transcription start site region 116325
Tssr116326 12 55014329 to 55014353 24 - TSS region transcription start site region 116326
Tssr116327 12 55014355 to 55014373 18 - TSS region transcription start site region 116327
Tssr116328 12 55015698 to 55015713 15 - TSS region transcription start site region 116328
2700097O09Rik 12 55045661 to 55080110 34449 - protein coding gene RIKEN cDNA 2700097O09 gene
Tssr116329 12 55053472 to 55053506 34 - TSS region transcription start site region 116329
Gm46350 12 55066503 to 55066917 414 - pseudogene predicted gene, 46350
Gm7511 12 55067752 to 55068201 449 - pseudogene predicted gene 7511