Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:44035836-49405844

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Asp1 12 35235497 to 46754950 11519453 QTL audiogenic seizure prone 1
Tssr3832 12 44075497 to 44075498 1 + TSS region transcription start site region 3832
Gm47056 12 44121756 to 44125600 3844 + pseudogene predicted gene, 47056
Gm7370 12 44202405 to 44203171 766 - pseudogene predicted gene 7370
Tssr116189 12 44203210 to 44203220 10 - TSS region transcription start site region 116189
Dnajb9 12 44205897 to 44210068 4171 - protein coding gene DnaJ heat shock protein family (Hsp40) member B9
Tssr116190 12 44207077 to 44207084 7 - TSS region transcription start site region 116190
Cpgi4574 12 44209304 to 44210534 1230 CpG island CpG island 4574
Tssr116191 12 44210061 to 44210077 16 - TSS region transcription start site region 116191
Tssr116192 12 44210095 to 44210104 9 - TSS region transcription start site region 116192
Tssr116193 12 44210114 to 44210127 13 - TSS region transcription start site region 116193
Tssr116194 12 44210178 to 44210185 7 - TSS region transcription start site region 116194
Mir5627 12 44210313 to 44210373 60 + miRNA gene microRNA 5627
Tssr113358 12 44210371 to 44210394 23 + TSS region transcription start site region 113358
Tssr116195 12 44210378 to 44210388 10 - TSS region transcription start site region 116195
Gm47096 12 44220387 to 44269118 48731 - lincRNA gene predicted gene, 47096
Tssr113359 12 44221352 to 44221355 3 + TSS region transcription start site region 113359
Cpgi4575 12 44221651 to 44222322 671 CpG island CpG island 4575
Gm2027 12 44221745 to 44223373 1628 + pseudogene predicted gene 2027
Tssr3833 12 44254739 to 44254750 11 + TSS region transcription start site region 3833
Cpgi4576 12 44268785 to 44269857 1072 CpG island CpG island 4576
Tssr116196 12 44268995 to 44269007 12 - TSS region transcription start site region 116196
Tssr116197 12 44269025 to 44269053 28 - TSS region transcription start site region 116197
Pnpla8 12 44269130 to 44315935 46805 + protein coding gene patatin-like phospholipase domain containing 8
Tssr113360 12 44269145 to 44269227 82 + TSS region transcription start site region 113360
Tssr113361 12 44269241 to 44269248 7 + TSS region transcription start site region 113361
Cpgi4577 12 44328480 to 44330317 1837 CpG island CpG island 4577
Tssr113362 12 44328541 to 44328548 7 + TSS region transcription start site region 113362
Tssr113363 12 44328560 to 44328573 13 + TSS region transcription start site region 113363
Tssr113364 12 44328849 to 44328863 14 + TSS region transcription start site region 113364
Tssr113365 12 44328882 to 44328954 72 + TSS region transcription start site region 113365
Nrcam 12 44328885 to 44601964 273079 + protein coding gene neuronal cell adhesion molecule
Tssr113366 12 44328964 to 44329009 45 + TSS region transcription start site region 113366
Tssr113367 12 44329192 to 44329209 17 + TSS region transcription start site region 113367
Gm48181 12 44373197 to 44374262 1065 + unclassified gene predicted gene, 48181
Tssr113368 12 44400830 to 44400834 4 + TSS region transcription start site region 113368
Gm48182 12 44409790 to 44411469 1679 + unclassified gene predicted gene, 48182
Tssr3834 12 44439012 to 44439041 29 + TSS region transcription start site region 3834
Tssr113369 12 44439046 to 44439069 23 + TSS region transcription start site region 113369
Tssr113370 12 44439078 to 44439089 11 + TSS region transcription start site region 113370
Tssr113371 12 44525557 to 44525562 5 + TSS region transcription start site region 113371
Tssr113372 12 44525606 to 44525622 16 + TSS region transcription start site region 113372
Tssr113373 12 44525638 to 44525660 22 + TSS region transcription start site region 113373
Tssr3835 12 44525672 to 44525675 3 + TSS region transcription start site region 3835
Tssr113374 12 44525692 to 44525702 10 + TSS region transcription start site region 113374
Tssr113375 12 44525711 to 44525730 19 + TSS region transcription start site region 113375
Tssr113376 12 44525738 to 44525741 3 + TSS region transcription start site region 113376
Tssr113377 12 44528908 to 44528933 25 + TSS region transcription start site region 113377
Tssr113378 12 44546766 to 44546775 9 + TSS region transcription start site region 113378
Gm6125 12 44619191 to 44622662 3471 - pseudogene predicted gene 6125
Gm19469 12 44758213 to 44758931 718 - pseudogene predicted gene, 19469
D12Mit272 12 44842154 to 44842274 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 272
Stxbp6 12 44852484 to 45074483 221999 - protein coding gene syntaxin binding protein 6 (amisyn)
D12Mit245 12 44920603 to 44920716 113 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 245
Gm15901 12 44923197 to 44924343 1146 + pseudogene predicted gene 15901
Gm33548 12 44925017 to 44932943 7926 + lncRNA gene predicted gene, 33548
Tssr113379 12 44930505 to 44930508 3 + TSS region transcription start site region 113379
Gm15902 12 44959647 to 44970878 11231 - sense intronic lncRNA gene predicted gene 15902
Gm38487 12 45010826 to 45018433 7607 - lncRNA gene predicted gene, 38487
Cpgi4578 12 45073712 to 45074839 1127 CpG island CpG island 4578
Tssr116198 12 45074294 to 45074306 12 - TSS region transcription start site region 116198
Tssr116199 12 45074315 to 45074347 32 - TSS region transcription start site region 116199
Tssr116200 12 45074359 to 45074388 29 - TSS region transcription start site region 116200
Tssr116201 12 45074457 to 45074488 31 - TSS region transcription start site region 116201
Tssr116202 12 45075109 to 45075153 44 - TSS region transcription start site region 116202
Tssr116203 12 45086078 to 45086083 5 - TSS region transcription start site region 116203
Tssr113380 12 45094001 to 45094019 18 + TSS region transcription start site region 113380
Gm48508 12 45094012 to 45162048 68036 + lincRNA gene predicted gene, 48508
Tssr116204 12 45099454 to 45099463 9 - TSS region transcription start site region 116204
Gm24731 12 45109007 to 45109137 130 + snoRNA gene predicted gene, 24731
D12Mit236 12 45116358 to 45116478 120 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 236
Gm22076 12 45359699 to 45359782 83 + rRNA gene predicted gene, 22076
Gm9921 12 45429377 to 45441698 12321 + lincRNA gene predicted gene 9921
Gm33680 12 45466282 to 45495325 29043 + lincRNA gene predicted gene, 33680
Tssr3836 12 45468466 to 45468467 1 + TSS region transcription start site region 3836
Gm48517 12 45572431 to 45573287 856 - pseudogene predicted gene, 48517
Tssr116205 12 45573309 to 45573310 1 - TSS region transcription start site region 116205
Gm48518 12 45669499 to 45671793 2294 - unclassified gene predicted gene, 48518
Gm48522 12 45731415 to 45736901 5486 - lincRNA gene predicted gene, 48522
Gm33811 12 45970693 to 46111510 140817 + lncRNA gene predicted gene, 33811
Gm24948 12 45984343 to 45984549 206 + snoRNA gene predicted gene, 24948
Hdlq18 12 46113902 to 46114101 199 QTL HDL QTL 18
D12Mit172 12 46113902 to 46114101 199 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 172
Gct2 12 46113902 to 46114101 199 QTL granulosa cell tumorigenesis 2
Gm40416 12 46205646 to 46212149 6503 + lncRNA gene predicted gene, 40416
Gm18112 12 46269750 to 46273884 4134 - pseudogene predicted gene, 18112
Gm48531 12 46281906 to 46282229 323 + pseudogene predicted gene, 48531
Cpgi4579 12 46399285 to 46399699 414 CpG island CpG island 4579
Gm7422 12 46478688 to 46479327 639 - pseudogene predicted gene 7422
Tssr116206 12 46626705 to 46626706 1 - TSS region transcription start site region 116206
Gm48535 12 46658603 to 46665709 7106 - lincRNA gene predicted gene, 48535
B230217J21Rik 12 46667317 to 46692992 25675 + lincRNA gene RIKEN cDNA B230217J21 gene
Gm48536 12 46683145 to 46686474 3329 - unclassified gene predicted gene, 48536
Nova1 12 46694517 to 46818929 124412 - protein coding gene neuro-oncological ventral antigen 1
Tssr116207 12 46696999 to 46697024 25 - TSS region transcription start site region 116207
Tssr116208 12 46698620 to 46698623 3 - TSS region transcription start site region 116208
Gm33869 12 46701075 to 46704216 3141 - protein coding gene predicted gene, 33869
Tssr116209 12 46720836 to 46720844 8 - TSS region transcription start site region 116209
Gm48543 12 46725773 to 46728001 2228 - unclassified gene predicted gene, 48543
Gm40417 12 46751221 to 46766283 15062 - lncRNA gene predicted gene, 40417
D12Mit112 12 46754801 to 46754950 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 112
Moen3 12 46754801 to 46754950 149 QTL modifier of engrailed QTL 3
D12Dcr1 12 46754803 to 46754896 93 DNA segment DNA Segment, Chr 12, Derry C. Roopenian 1
Tssr116210 12 46784314 to 46784318 4 - TSS region transcription start site region 116210
Tssr116211 12 46785269 to 46785272 3 - TSS region transcription start site region 116211
Gm48542 12 46806952 to 46811508 4556 - unclassified gene predicted gene, 48542
Tssr116212 12 46816923 to 46816961 38 - TSS region transcription start site region 116212
Cpgi4580 12 46817994 to 46820012 2018 CpG island CpG island 4580
Tssr116213 12 46818078 to 46818096 18 - TSS region transcription start site region 116213
Tssr116214 12 46818108 to 46818129 21 - TSS region transcription start site region 116214
Tssr116215 12 46818135 to 46818155 20 - TSS region transcription start site region 116215
Tssr116216 12 46818341 to 46818357 16 - TSS region transcription start site region 116216
Tssr116217 12 46818496 to 46818517 21 - TSS region transcription start site region 116217
Tssr116218 12 46818749 to 46818788 39 - TSS region transcription start site region 116218
Tssr116219 12 46818926 to 46818937 11 - TSS region transcription start site region 116219
Tssr116220 12 46818982 to 46819004 22 - TSS region transcription start site region 116220
Tssr116221 12 46819020 to 46819026 6 - TSS region transcription start site region 116221
Tssr116222 12 46819043 to 46819058 15 - TSS region transcription start site region 116222
Tssr116223 12 46819087 to 46819096 9 - TSS region transcription start site region 116223
Tssr116224 12 46819188 to 46819204 16 - TSS region transcription start site region 116224
Tssr116225 12 46819244 to 46819249 5 - TSS region transcription start site region 116225
Tssr116226 12 46819353 to 46819371 18 - TSS region transcription start site region 116226
Tssr116227 12 46819469 to 46819498 29 - TSS region transcription start site region 116227
Tssr116228 12 46819499 to 46819517 18 - TSS region transcription start site region 116228
Gm25051 12 46832559 to 46832807 248 - unclassified non-coding RNA gene predicted gene, 25051
Gm36971 12 47165042 to 47165507 465 + unclassified gene predicted gene, 36971
Gm2089 12 47199991 to 47200469 478 + pseudogene predicted gene 2089
Gm48578 12 47532257 to 47544289 12032 + lincRNA gene predicted gene, 48578
Tssr113381 12 47812877 to 47812889 12 + TSS region transcription start site region 113381
Gm7392 12 47812905 to 47813249 344 + pseudogene predicted gene 7392
Tssr113382 12 47812985 to 47813024 39 + TSS region transcription start site region 113382
Tssr113383 12 47833929 to 47833957 28 + TSS region transcription start site region 113383
Tssr116229 12 47833963 to 47833975 12 - TSS region transcription start site region 116229
Tssr113384 12 47833979 to 47833994 15 + TSS region transcription start site region 113384
Tssr113385 12 47834048 to 47834062 14 + TSS region transcription start site region 113385
Tssr116230 12 47834081 to 47834091 10 - TSS region transcription start site region 116230
D12Mit111 12 47942531 to 47942717 186 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 111
Gm46327 12 48047000 to 48047534 534 - pseudogene predicted gene, 46327
Gm46318 12 48133705 to 48133893 188 + pseudogene predicted gene, 46318
Gm48587 12 48495219 to 48495486 267 + pseudogene predicted gene, 48587
Tssr3837 12 48529624 to 48529632 8 - TSS region transcription start site region 3837
Gm1818 12 48555308 to 48559885 4577 - pseudogene predicted gene 1818
Gm29818 12 48632293 to 48632457 164 + pseudogene predicted gene, 29818
Olfr1400-ps1 12 48903851 to 48904550 699 - pseudogene olfactory receptor 1400, pseudogene 1
Olfr1399-ps1 12 48905578 to 48905990 412 - pseudogene olfactory receptor 1399, pseudogene 1
Gm26454 12 49009883 to 49009989 106 + snRNA gene predicted gene, 26454
Gm7456 12 49140256 to 49141266 1010 + pseudogene predicted gene 7456
Gm18623 12 49324737 to 49325615 878 + pseudogene predicted gene, 18623
Gm34304 12 49368729 to 49381885 13156 - lincRNA gene predicted gene, 34304
Tssr113386 12 49377657 to 49377672 15 + TSS region transcription start site region 113386
Tssr113387 12 49377768 to 49377785 17 + TSS region transcription start site region 113387
Tssr113388 12 49377821 to 49377851 30 + TSS region transcription start site region 113388
Tssr116231 12 49381824 to 49381830 6 - TSS region transcription start site region 116231
Tssr113389 12 49381974 to 49381995 21 + TSS region transcription start site region 113389
Tssr113390 12 49382057 to 49382078 21 + TSS region transcription start site region 113390
Tssr113391 12 49382652 to 49382667 15 + TSS region transcription start site region 113391
Tssr113392 12 49382676 to 49382691 15 + TSS region transcription start site region 113392
Tssr113393 12 49382791 to 49382802 11 + TSS region transcription start site region 113393
Foxg1 12 49382883 to 49386867 3984 + protein coding gene forkhead box G1
Cpgi4581 12 49382961 to 49385884 2923 CpG island CpG island 4581
Tssr113394 12 49383085 to 49383105 20 + TSS region transcription start site region 113394
Tssr113395 12 49383917 to 49383963 46 + TSS region transcription start site region 113395
Tssr113396 12 49384125 to 49384157 32 + TSS region transcription start site region 113396
Tssr113397 12 49384258 to 49384282 24 + TSS region transcription start site region 113397
Tssr113398 12 49384287 to 49384316 29 + TSS region transcription start site region 113398
Tssr3838 12 49384332 to 49384343 11 + TSS region transcription start site region 3838
Tssr113399 12 49384356 to 49384365 9 + TSS region transcription start site region 113399
Tssr113400 12 49384366 to 49384398 32 + TSS region transcription start site region 113400
Tssr113401 12 49384510 to 49384523 13 + TSS region transcription start site region 113401
Tssr113402 12 49384560 to 49384580 20 + TSS region transcription start site region 113402
Tssr113403 12 49384935 to 49384946 11 + TSS region transcription start site region 113403
Tssr113404 12 49384961 to 49384972 11 + TSS region transcription start site region 113404
Tssr113405 12 49384986 to 49385028 42 + TSS region transcription start site region 113405
Gm43517 12 49385174 to 49394127 8953 + protein coding gene predicted gene 43517
Tssr113406 12 49385189 to 49385199 10 + TSS region transcription start site region 113406
Tssr113407 12 49385444 to 49385463 19 + TSS region transcription start site region 113407
Tssr113408 12 49385652 to 49385658 6 + TSS region transcription start site region 113408
3110039M20Rik 12 49389652 to 49407346 17694 + lincRNA gene RIKEN cDNA 3110039M20 gene
Tssr113409 12 49389859 to 49389894 35 + TSS region transcription start site region 113409
Cpgi4582 12 49391252 to 49392143 891 CpG island CpG island 4582
Cpgi4583 12 49394936 to 49395142 206 CpG island CpG island 4583
Cpgi4584 12 49401024 to 49401976 952 CpG island CpG island 4584