Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:42625165-44295170

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D12Mit235 12 42849089 to 42849238 149 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 235
D12Mit1001 12 42895658 to 42895774 116 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 1001
Gm33340 12 43006469 to 43034225 27756 - lincRNA gene predicted gene, 33340
Gm47030 12 43306143 to 43364488 58345 + lincRNA gene predicted gene, 47030
Tssr113357 12 43460165 to 43460170 5 + TSS region transcription start site region 113357
Gm33384 12 43627176 to 43851503 224327 - lncRNA gene predicted gene, 33384
Gm26326 12 43743037 to 43743165 128 + snoRNA gene predicted gene, 26326
Gm47036 12 43750774 to 43754614 3840 + pseudogene predicted gene, 47036
Gm10165 12 43810543 to 43844193 33650 - lincRNA gene predicted gene 10165
Gm46349 12 43955897 to 43956679 782 - lincRNA gene predicted gene, 46349
Tssr3832 12 44075497 to 44075498 1 + TSS region transcription start site region 3832
Gm47056 12 44121756 to 44125600 3844 + pseudogene predicted gene, 47056
Gm7370 12 44202405 to 44203171 766 - pseudogene predicted gene 7370
Tssr116189 12 44203210 to 44203220 10 - TSS region transcription start site region 116189
Dnajb9 12 44205897 to 44210068 4171 - protein coding gene DnaJ heat shock protein family (Hsp40) member B9
Tssr116190 12 44207077 to 44207084 7 - TSS region transcription start site region 116190
Cpgi4574 12 44209304 to 44210534 1230 CpG island CpG island 4574
Tssr116191 12 44210061 to 44210077 16 - TSS region transcription start site region 116191
Tssr116192 12 44210095 to 44210104 9 - TSS region transcription start site region 116192
Tssr116193 12 44210114 to 44210127 13 - TSS region transcription start site region 116193
Tssr116194 12 44210178 to 44210185 7 - TSS region transcription start site region 116194
Mir5627 12 44210313 to 44210373 60 + miRNA gene microRNA 5627
Tssr113358 12 44210371 to 44210394 23 + TSS region transcription start site region 113358
Tssr116195 12 44210378 to 44210388 10 - TSS region transcription start site region 116195
Gm47096 12 44220387 to 44269118 48731 - lincRNA gene predicted gene, 47096
Tssr113359 12 44221352 to 44221355 3 + TSS region transcription start site region 113359
Cpgi4575 12 44221651 to 44222322 671 CpG island CpG island 4575
Gm2027 12 44221745 to 44223373 1628 + pseudogene predicted gene 2027
Tssr3833 12 44254739 to 44254750 11 + TSS region transcription start site region 3833
Cpgi4576 12 44268785 to 44269857 1072 CpG island CpG island 4576
Tssr116196 12 44268995 to 44269007 12 - TSS region transcription start site region 116196
Tssr116197 12 44269025 to 44269053 28 - TSS region transcription start site region 116197
Pnpla8 12 44269130 to 44315935 46805 + protein coding gene patatin-like phospholipase domain containing 8
Tssr113360 12 44269145 to 44269227 82 + TSS region transcription start site region 113360
Tssr113361 12 44269241 to 44269248 7 + TSS region transcription start site region 113361