Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:35613546-38674528

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34047 12 35602544 to 35694682 92138 + lincRNA gene predicted gene, 34047
Tssr116128 12 35642354 to 35642370 16 - TSS region transcription start site region 116128
9130015A21Rik 12 35672290 to 35695118 22828 - lincRNA gene RIKEN cDNA 9130015A21 gene
Tssr116129 12 35676617 to 35676624 7 - TSS region transcription start site region 116129
Tssr116130 12 35686255 to 35686269 14 - TSS region transcription start site region 116130
Tssr113224 12 35712945 to 35712949 4 + TSS region transcription start site region 113224
D12Mit147 12 35723478 to 35723626 148 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 147
Gm40388 12 35724194 to 35746671 22477 - lncRNA gene predicted gene, 40388
Tssr113225 12 35724576 to 35724625 49 + TSS region transcription start site region 113225
Gm48264 12 35746229 to 35748247 2018 + unclassified gene predicted gene, 48264
Gm46317 12 35761385 to 35761777 392 - pseudogene predicted gene, 46317
Tssr3825 12 35772845 to 35772846 1 + TSS region transcription start site region 3825
Gm7002 12 35772951 to 35775115 2164 + pseudogene predicted gene 7002
Gm9472 12 35818739 to 35819264 525 - pseudogene predicted gene 9472
D12Mit221 12 35901444 to 35901551 107 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 221
Eccp 12 35901444 to 82619165 46717721 heritable phenotypic marker eccentric pupil
Agr3 12 35925621 to 35949737 24116 + protein coding gene anterior gradient 3
Tssr113226 12 35925661 to 35925671 10 + TSS region transcription start site region 113226
Tssr113227 12 35925679 to 35925708 29 + TSS region transcription start site region 113227
Tssr113228 12 35992900 to 35992917 17 + TSS region transcription start site region 113228
Agr2 12 35992925 to 36004081 11156 + protein coding gene anterior gradient 2
Tspan13 12 36014555 to 36042478 27923 - protein coding gene tetraspanin 13
Tssr116131 12 36019675 to 36019693 18 - TSS region transcription start site region 116131
Tssr113229 12 36020527 to 36020546 19 + TSS region transcription start site region 113229
Tssr116132 12 36020562 to 36020596 34 - TSS region transcription start site region 116132
Tssr116133 12 36039550 to 36039566 16 - TSS region transcription start site region 116133
Cpgi4558 12 36041780 to 36042831 1051 CpG island CpG island 4558
Tssr116134 12 36042451 to 36042462 11 - TSS region transcription start site region 116134
Tssr116135 12 36042476 to 36042516 40 - TSS region transcription start site region 116135
Gm5434 12 36090379 to 36091829 1450 + pseudogene predicted gene 5434
Bzw2 12 36091835 to 36156825 64990 - protein coding gene basic leucine zipper and W2 domains 2
Gm18115 12 36115079 to 36115671 592 + pseudogene predicted gene, 18115
Gm48369 12 36146183 to 36147922 1739 - unclassified gene predicted gene, 48369
Cpgi4559 12 36156206 to 36158260 2054 CpG island CpG island 4559
Tssr116136 12 36156724 to 36156735 11 - TSS region transcription start site region 116136
Tssr116137 12 36156747 to 36156776 29 - TSS region transcription start site region 116137
Tssr116138 12 36156781 to 36156815 34 - TSS region transcription start site region 116138
Tssr113230 12 36157122 to 36157133 11 + TSS region transcription start site region 113230
Ankmy2 12 36157124 to 36197291 40167 + protein coding gene ankyrin repeat and MYND domain containing 2
Tssr113231 12 36157167 to 36157238 71 + TSS region transcription start site region 113231
Gm19046 12 36172368 to 36173662 1294 + pseudogene predicted gene, 19046
Tssr113232 12 36196644 to 36196648 4 + TSS region transcription start site region 113232
Lrrc72 12 36208345 to 36253398 45053 - protein coding gene leucine rich repeat containing 72
Cpgi4560 12 36208477 to 36208759 282 CpG island CpG island 4560
1700101O05Rik 12 36212310 to 36212434 124 unclassified gene RIKEN cDNA 1700101O05 gene
Tssr116139 12 36218172 to 36218187 15 - TSS region transcription start site region 116139
Tssr116140 12 36218188 to 36218205 17 - TSS region transcription start site region 116140
Gm40390 12 36249901 to 36253763 3862 + lncRNA gene predicted gene, 40390
Tssr116141 12 36253396 to 36253425 29 - TSS region transcription start site region 116141
Gm40392 12 36264963 to 36291019 26056 + lincRNA gene predicted gene, 40392
Tssr113233 12 36314137 to 36314148 11 + TSS region transcription start site region 113233
Tssr113234 12 36314160 to 36314171 11 + TSS region transcription start site region 113234
Sostdc1 12 36314169 to 36318452 4283 + protein coding gene sclerostin domain containing 1
Tssr113235 12 36314216 to 36314232 16 + TSS region transcription start site region 113235
Tssr113236 12 36314426 to 36314438 12 + TSS region transcription start site region 113236
Cpgi4561 12 36317050 to 36317555 505 CpG island CpG island 4561
Tssr113237 12 36326302 to 36326345 43 + TSS region transcription start site region 113237
Gm34215 12 36330333 to 36331900 1567 + lincRNA gene predicted gene, 34215
Gm25438 12 36373774 to 36373883 109 - snoRNA gene predicted gene, 25438
D630036H23Rik 12 36381242 to 36382181 939 - protein coding gene RIKEN cDNA D630036H23 gene
Cpgi4562 12 36381446 to 36382255 809 CpG island CpG island 4562
Crppa 12 36381450 to 36689503 308053 + protein coding gene CDP-L-ribitol pyrophosphorylase A
Tssr113238 12 36381548 to 36381594 46 + TSS region transcription start site region 113238
Tssr113239 12 36532790 to 36532799 9 + TSS region transcription start site region 113239
Gm7252 12 36539357 to 36539812 455 + pseudogene predicted gene 7252
Tssr3826 12 36569911 to 36569913 2 + TSS region transcription start site region 3826
Tssr113240 12 36607464 to 36607468 4 + TSS region transcription start site region 113240
Tssr116142 12 36627395 to 36627413 18 - TSS region transcription start site region 116142
Tssr113241 12 36676718 to 36676727 9 + TSS region transcription start site region 113241
Tssr113242 12 36676750 to 36676758 8 + TSS region transcription start site region 113242
Tssr113243 12 36677323 to 36677344 21 + TSS region transcription start site region 113243
Tssr113244 12 36677368 to 36677369 1 + TSS region transcription start site region 113244
Edlmmq10 12 36689834 to 36689834 0 QTL extensor digitorum longus muscle mass QTL 10
D12Mit271 12 36800215 to 36800333 118 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 271
Mir5099 12 36816205 to 36816278 73 + miRNA gene microRNA 5099
Tssr113245 12 36816248 to 36816249 1 + TSS region transcription start site region 113245
Cpgi4563 12 36816256 to 36816622 366 CpG island CpG island 4563
Gm40394 12 36882971 to 36903014 20043 + lincRNA gene predicted gene, 40394
Gm48613 12 36945251 to 36952555 7304 - lincRNA gene predicted gene, 48613
Gm18026 12 36968424 to 36969150 726 - pseudogene predicted gene, 18026
Gm44326 12 37001839 to 37001939 100 - miRNA gene predicted gene, 44326
Gm48616 12 37013575 to 37089385 75810 + lincRNA gene predicted gene, 48616
Tssr113246 12 37013577 to 37013598 21 + TSS region transcription start site region 113246
Gm48617 12 37049217 to 37147149 97932 + sense intronic lncRNA gene predicted gene, 48617
Tssr116143 12 37081865 to 37081868 3 - TSS region transcription start site region 116143
Gm29007 12 37098550 to 37106789 8239 - lincRNA gene predicted gene 29007
Tssr116144 12 37106750 to 37106757 7 - TSS region transcription start site region 116144
Cpgi4564 12 37108226 to 37109777 1551 CpG island CpG island 4564
Tssr113247 12 37108533 to 37108546 13 + TSS region transcription start site region 113247
Meox2 12 37108546 to 37179528 70982 + protein coding gene mesenchyme homeobox 2
Tssr113248 12 37108554 to 37108607 53 + TSS region transcription start site region 113248
Tssr113249 12 37108616 to 37108631 15 + TSS region transcription start site region 113249
Tssr113250 12 37108632 to 37108643 11 + TSS region transcription start site region 113250
Tssr113251 12 37108661 to 37108673 12 + TSS region transcription start site region 113251
Tssr113252 12 37241620 to 37241631 11 + TSS region transcription start site region 113252
Tssr113253 12 37241633 to 37241654 21 + TSS region transcription start site region 113253
Agmo 12 37241639 to 37581932 340293 + protein coding gene alkylglycerol monooxygenase
Tssr113254 12 37241668 to 37241683 15 + TSS region transcription start site region 113254
Tssr113255 12 37241729 to 37241758 29 + TSS region transcription start site region 113255
Tssr113256 12 37241766 to 37241784 18 + TSS region transcription start site region 113256
Tssr113257 12 37241804 to 37241897 93 + TSS region transcription start site region 113257
Tssr113258 12 37241899 to 37241904 5 + TSS region transcription start site region 113258
Tssr113259 12 37241905 to 37241921 16 + TSS region transcription start site region 113259
Tssr113260 12 37241925 to 37241939 14 + TSS region transcription start site region 113260
Tssr113261 12 37242001 to 37242008 7 + TSS region transcription start site region 113261
Tssr113262 12 37242030 to 37242039 9 + TSS region transcription start site region 113262
Tssr113263 12 37242065 to 37242098 33 + TSS region transcription start site region 113263
Tssr113264 12 37416687 to 37416690 3 + TSS region transcription start site region 113264
Gm34408 12 37446746 to 37475031 28285 - antisense lncRNA gene predicted gene, 34408
Tssr116145 12 37474989 to 37475004 15 - TSS region transcription start site region 116145
Tssr113265 12 37569221 to 37569222 1 + TSS region transcription start site region 113265
Gm48660 12 37569279 to 37569560 281 + pseudogene predicted gene, 48660
Dgkb 12 37880168 to 38634239 754071 + protein coding gene diacylglycerol kinase, beta
Tssr113266 12 37880170 to 37880179 9 + TSS region transcription start site region 113266
Tssr113267 12 37880182 to 37880213 31 + TSS region transcription start site region 113267
Tssr113268 12 37880306 to 37880341 35 + TSS region transcription start site region 113268
Tssr113269 12 37880571 to 37880648 77 + TSS region transcription start site region 113269
Tssr113270 12 37880663 to 37880679 16 + TSS region transcription start site region 113270
Tssr113271 12 37880700 to 37880728 28 + TSS region transcription start site region 113271
Tssr113272 12 37880773 to 37880800 27 + TSS region transcription start site region 113272
Tssr113273 12 37880806 to 37880878 72 + TSS region transcription start site region 113273
Cpgi4565 12 37880811 to 37881039 228 CpG island CpG island 4565
Tssr113274 12 37880879 to 37880899 20 + TSS region transcription start site region 113274
Tssr113275 12 37880913 to 37880924 11 + TSS region transcription start site region 113275
Gm48713 12 37938463 to 37941308 2845 + unclassified gene predicted gene, 48713
Tssr113276 12 38036776 to 38036778 2 + TSS region transcription start site region 113276
Gm48715 12 38047093 to 38075735 28642 - antisense lncRNA gene predicted gene, 48715
Gm35755 12 38089902 to 38092463 2561 + pseudogene predicted gene, 35755
Tssr113277 12 38123871 to 38123877 6 + TSS region transcription start site region 113277
Gm18338 12 38368671 to 38369230 559 - pseudogene predicted gene, 18338
C030045M22Rik 12 38501446 to 38502569 1123 unclassified gene RIKEN cDNA C030045M22 gene
8030450B20Rik 12 38517546 to 38520304 2758 unclassified gene RIKEN cDNA 8030450B20 gene
Tssr113278 12 38545292 to 38545296 4 + TSS region transcription start site region 113278
4930428E07Rik 12 38552809 to 38614521 61712 - antisense lncRNA gene RIKEN cDNA 4930428E07 gene