Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:33224852-36744873

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atxn7l1 12 33147693 to 33373185 225492 + protein coding gene ataxin 7-like 1
Atxn7l1os1 12 33193994 to 33228854 34860 - antisense lncRNA gene ataxin 7-like 1, opposite strand 1
Tssr113181 12 33250123 to 33250154 31 + TSS region transcription start site region 113181
Gm38649 12 33252441 to 33259993 7552 - lncRNA gene predicted gene, 38649
Tssr3823 12 33279449 to 33279450 1 - TSS region transcription start site region 3823
Tssr116105 12 33284544 to 33284549 5 - TSS region transcription start site region 116105
Tssr113182 12 33302246 to 33302266 20 + TSS region transcription start site region 113182
Cpgi4546 12 33302867 to 33303113 246 CpG island CpG island 4546
Tssr113183 12 33313989 to 33314019 30 + TSS region transcription start site region 113183
Tssr113184 12 33314262 to 33314288 26 + TSS region transcription start site region 113184
Tssr113185 12 33314289 to 33314328 39 + TSS region transcription start site region 113185
Tssr113186 12 33314333 to 33314368 35 + TSS region transcription start site region 113186
Tssr113187 12 33314375 to 33314408 33 + TSS region transcription start site region 113187
Tssr116106 12 33315241 to 33315262 21 - TSS region transcription start site region 116106
Tssr113188 12 33315393 to 33315411 18 + TSS region transcription start site region 113188
Tssr113189 12 33315412 to 33315447 35 + TSS region transcription start site region 113189
Tssr113190 12 33315490 to 33315501 11 + TSS region transcription start site region 113190
Tssr113191 12 33315513 to 33315526 13 + TSS region transcription start site region 113191
Tssr116107 12 33316644 to 33316655 11 - TSS region transcription start site region 116107
4933422E07Rik 12 33329591 to 33330466 875 unclassified gene RIKEN cDNA 4933422E07 gene
Tssr113192 12 33333153 to 33333155 2 + TSS region transcription start site region 113192
Tssr113193 12 33333235 to 33333250 15 + TSS region transcription start site region 113193
Tssr113194 12 33337413 to 33337425 12 + TSS region transcription start site region 113194
Tssr113195 12 33337508 to 33337511 3 + TSS region transcription start site region 113195
Tssr113196 12 33348402 to 33348408 6 + TSS region transcription start site region 113196
Atxn7l1os2 12 33358243 to 33394760 36517 - antisense lncRNA gene ataxin 7-like 1, opposite strand 2
Tssr113197 12 33374484 to 33374488 4 + TSS region transcription start site region 113197
Tssr113198 12 33394815 to 33394824 9 + TSS region transcription start site region 113198
Efcab10 12 33394854 to 33401267 6413 + protein coding gene EF-hand calcium binding domain 10
Tssr113199 12 33394858 to 33394868 10 + TSS region transcription start site region 113199
Cpgi4547 12 33395031 to 33395369 338 CpG island CpG island 4547
Tssr113200 12 33395050 to 33395090 40 + TSS region transcription start site region 113200
Gm47506 12 33401365 to 33404775 3410 - pseudogene predicted gene, 47506
Cpgi4548 12 33429436 to 33430166 730 CpG island CpG island 4548
Tssr113201 12 33429605 to 33429649 44 + TSS region transcription start site region 113201
Twistnb 12 33429624 to 33439380 9756 + protein coding gene twist basic helix-loop-helix transcription factor 1 neighbor
Tssr113202 12 33434103 to 33434110 7 + TSS region transcription start site region 113202
Gm23529 12 33452712 to 33452843 131 - snoRNA gene predicted gene, 23529
Gm9368 12 33496067 to 33496897 830 - pseudogene predicted gene 9368
Cpgi4549 12 33780876 to 33781235 359 CpG island CpG island 4549
Tssr3824 12 33845519 to 33845521 2 + TSS region transcription start site region 3824
Gm9370 12 33846454 to 33847062 608 + pseudogene predicted gene 9370
Gm40383 12 33913782 to 33936304 22522 - bidirectional promoter lncRNA gene predicted gene, 40383
Tssr113203 12 33928402 to 33928407 5 + TSS region transcription start site region 113203
Ferd3l 12 33928425 to 33929310 885 + protein coding gene Fer3 like bHLH transcription factor
Cpgi4550 12 33928645 to 33929129 484 CpG island CpG island 4550
Tssr116108 12 33936291 to 33936307 16 - TSS region transcription start site region 116108
Cpgi4551 12 33956873 to 33958914 2041 CpG island CpG island 4551
Tssr113204 12 33957645 to 33957665 20 + TSS region transcription start site region 113204
Twist1 12 33957671 to 33959829 2158 + protein coding gene twist basic helix-loop-helix transcription factor 1
Tssr113205 12 33957817 to 33957888 71 + TSS region transcription start site region 113205
Cpgi4552 12 33962433 to 33962673 240 CpG island CpG island 4552
Tssr113206 12 33964336 to 33964340 4 + TSS region transcription start site region 113206
Tssr113207 12 33965061 to 33965065 4 + TSS region transcription start site region 113207
Cpgi4553 12 33967502 to 33967842 340 CpG island CpG island 4553
Cpgi4554 12 33968511 to 33968734 223 CpG island CpG island 4554
Hdac9 12 34047580 to 34917095 869515 - protein coding gene histone deacetylase 9
Gm40384 12 34086586 to 34095984 9398 + lncRNA gene predicted gene, 40384
Tssr116109 12 34212723 to 34212731 8 - TSS region transcription start site region 116109
Gm18025 12 34290274 to 34291135 861 - pseudogene predicted gene, 18025
Tssr116110 12 34528844 to 34528904 60 - TSS region transcription start site region 116110
Tssr116111 12 34528909 to 34528927 18 - TSS region transcription start site region 116111
Gm47357 12 34623907 to 34628638 4731 - sense intronic lncRNA gene predicted gene, 47357
Tssr116112 12 34639517 to 34639519 2 - TSS region transcription start site region 116112
Tssr113208 12 34653799 to 34653803 4 + TSS region transcription start site region 113208
Tssr116113 12 34714309 to 34714328 19 - TSS region transcription start site region 116113
Tssr116114 12 34714337 to 34714349 12 - TSS region transcription start site region 116114
Tssr116115 12 34714546 to 34714568 22 - TSS region transcription start site region 116115
Tssr116116 12 34770638 to 34770641 3 - TSS region transcription start site region 116116
Gm46347 12 34773455 to 34787766 14311 - lncRNA gene predicted gene, 46347
Hdlq90 12 34789940 to 34790082 142 QTL HDL QTL 90
D12Mit60 12 34789940 to 34790082 142 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 60
Tssr116117 12 34817492 to 34817501 9 - TSS region transcription start site region 116117
Tssr113209 12 34853688 to 34853689 1 + TSS region transcription start site region 113209
Gm40875 12 34872832 to 34890558 17726 + lncRNA gene predicted gene, 40875
4921508M14Rik 12 34873730 to 34874828 1098 - unclassified gene RIKEN cDNA 4921508M14 gene
Tssr116118 12 34874802 to 34874828 26 - TSS region transcription start site region 116118
Gm24429 12 34895024 to 34895155 131 + snoRNA gene predicted gene, 24429
Cpgi4555 12 34906459 to 34907741 1282 CpG island CpG island 4555
Tssr116119 12 34906880 to 34906895 15 - TSS region transcription start site region 116119
Tssr116120 12 34906909 to 34906955 46 - TSS region transcription start site region 116120
Tssr116121 12 34917089 to 34917100 11 - TSS region transcription start site region 116121
Gm33864 12 34933435 to 34990883 57448 - lncRNA gene predicted gene, 33864
Tssr113210 12 34984748 to 34984758 10 + TSS region transcription start site region 113210
Prps1l1 12 34984761 to 34986436 1675 + protein coding gene phosphoribosyl pyrophosphate synthetase 1-like 1
Tssr113211 12 34984776 to 34984814 38 + TSS region transcription start site region 113211
Tssr113212 12 34984818 to 34984838 20 + TSS region transcription start site region 113212
Tssr113213 12 34984852 to 34984873 21 + TSS region transcription start site region 113213
Tssr113214 12 34990610 to 34990615 5 + TSS region transcription start site region 113214
Gm40385 12 34990945 to 35021568 30623 - lncRNA gene predicted gene, 40385
Gm24359 12 35000337 to 35000557 220 - unclassified non-coding RNA gene predicted gene, 24359
Tssr116122 12 35021427 to 35021443 16 - TSS region transcription start site region 116122
Gm40386 12 35038321 to 35042667 4346 + lncRNA gene predicted gene, 40386
Gm33922 12 35039446 to 35043459 4013 - lncRNA gene predicted gene, 33922
Bbaa10 12 35041005 to 65464245 30423240 QTL B.burgdorferi-associated arthritis 10
D12Mit46 12 35041005 to 35041138 133 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 46
Cpgi4556 12 35046654 to 35048023 1369 CpG island CpG island 4556
Tssr113215 12 35047180 to 35047230 50 + TSS region transcription start site region 113215
Snx13 12 35047186 to 35147479 100293 + protein coding gene sorting nexin 13
Tssr113216 12 35047252 to 35047263 11 + TSS region transcription start site region 113216
Tssr116123 12 35047795 to 35047807 12 - TSS region transcription start site region 116123
Tssr113217 12 35050993 to 35050999 6 + TSS region transcription start site region 113217
Gm10933 12 35055101 to 35056961 1860 + unclassified gene predicted gene 10933
Tssr113218 12 35097693 to 35097720 27 + TSS region transcription start site region 113218
Tssr113219 12 35135986 to 35136005 19 + TSS region transcription start site region 113219
Gm48137 12 35140892 to 35143130 2238 + unclassified gene predicted gene, 48137
Mir680-3 12 35194811 to 35194897 86 - miRNA gene microRNA 680-3
D12Mit243 12 35209967 to 35210068 101 DNA segment DNA Segment, Chr 12, Massachusetts Institute of Technology 243
Ath18 12 35209967 to 35210068 101 QTL atherosclerosis 18
D12Mit153 12 35235497 to 35235638 141 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 153
Asp1 12 35235497 to 46754950 11519453 QTL audiogenic seizure prone 1
Gm44396 12 35308891 to 35309004 113 + miRNA gene predicted gene, 44396
Gm26071 12 35441190 to 35441296 106 + snRNA gene predicted gene, 26071
Ahr 12 35497979 to 35534989 37010 - protein coding gene aryl-hydrocarbon receptor
Tssr116124 12 35527614 to 35527620 6 - TSS region transcription start site region 116124
Tssr116125 12 35533880 to 35533881 1 - TSS region transcription start site region 116125
Cpgi4557 12 35534058 to 35535448 1390 CpG island CpG island 4557
Tssr113220 12 35534387 to 35534396 9 + TSS region transcription start site region 113220
Gm48236 12 35534421 to 35590446 56025 + lincRNA gene predicted gene, 48236
Tssr116126 12 35534611 to 35534626 15 - TSS region transcription start site region 116126
Tssr116127 12 35534973 to 35535058 85 - TSS region transcription start site region 116127
Gm48237 12 35546031 to 35548132 2101 + lincRNA gene predicted gene, 48237
Tssr113221 12 35579305 to 35579310 5 + TSS region transcription start site region 113221
Tssr113222 12 35579354 to 35579379 25 + TSS region transcription start site region 113222
Tssr113223 12 35579542 to 35579553 11 + TSS region transcription start site region 113223
Gm34047 12 35602544 to 35694682 92138 + lincRNA gene predicted gene, 34047
Tssr116128 12 35642354 to 35642370 16 - TSS region transcription start site region 116128
9130015A21Rik 12 35672290 to 35695118 22828 - lincRNA gene RIKEN cDNA 9130015A21 gene
Tssr116129 12 35676617 to 35676624 7 - TSS region transcription start site region 116129
Tssr116130 12 35686255 to 35686269 14 - TSS region transcription start site region 116130
Tssr113224 12 35712945 to 35712949 4 + TSS region transcription start site region 113224
D12Mit147 12 35723478 to 35723626 148 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 147
Gm40388 12 35724194 to 35746671 22477 - lncRNA gene predicted gene, 40388
Tssr113225 12 35724576 to 35724625 49 + TSS region transcription start site region 113225
Gm48264 12 35746229 to 35748247 2018 + unclassified gene predicted gene, 48264
Gm46317 12 35761385 to 35761777 392 - pseudogene predicted gene, 46317
Tssr3825 12 35772845 to 35772846 1 + TSS region transcription start site region 3825
Gm7002 12 35772951 to 35775115 2164 + pseudogene predicted gene 7002
Gm9472 12 35818739 to 35819264 525 - pseudogene predicted gene 9472
Eccp 12 35901444 to 82619165 46717721 heritable phenotypic marker eccentric pupil
D12Mit221 12 35901444 to 35901551 107 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 221
Agr3 12 35925621 to 35949737 24116 + protein coding gene anterior gradient 3
Tssr113226 12 35925661 to 35925671 10 + TSS region transcription start site region 113226
Tssr113227 12 35925679 to 35925708 29 + TSS region transcription start site region 113227
Tssr113228 12 35992900 to 35992917 17 + TSS region transcription start site region 113228
Agr2 12 35992925 to 36004081 11156 + protein coding gene anterior gradient 2
Tspan13 12 36014555 to 36042478 27923 - protein coding gene tetraspanin 13
Tssr116131 12 36019675 to 36019693 18 - TSS region transcription start site region 116131
Tssr113229 12 36020527 to 36020546 19 + TSS region transcription start site region 113229
Tssr116132 12 36020562 to 36020596 34 - TSS region transcription start site region 116132
Tssr116133 12 36039550 to 36039566 16 - TSS region transcription start site region 116133
Cpgi4558 12 36041780 to 36042831 1051 CpG island CpG island 4558
Tssr116134 12 36042451 to 36042462 11 - TSS region transcription start site region 116134
Tssr116135 12 36042476 to 36042516 40 - TSS region transcription start site region 116135
Gm5434 12 36090379 to 36091829 1450 + pseudogene predicted gene 5434
Bzw2 12 36091835 to 36156825 64990 - protein coding gene basic leucine zipper and W2 domains 2
Gm18115 12 36115079 to 36115671 592 + pseudogene predicted gene, 18115
Gm48369 12 36146183 to 36147922 1739 - unclassified gene predicted gene, 48369
Cpgi4559 12 36156206 to 36158260 2054 CpG island CpG island 4559
Tssr116136 12 36156724 to 36156735 11 - TSS region transcription start site region 116136
Tssr116137 12 36156747 to 36156776 29 - TSS region transcription start site region 116137
Tssr116138 12 36156781 to 36156815 34 - TSS region transcription start site region 116138
Tssr113230 12 36157122 to 36157133 11 + TSS region transcription start site region 113230
Ankmy2 12 36157124 to 36197291 40167 + protein coding gene ankyrin repeat and MYND domain containing 2
Tssr113231 12 36157167 to 36157238 71 + TSS region transcription start site region 113231
Gm19046 12 36172368 to 36173662 1294 + pseudogene predicted gene, 19046
Tssr113232 12 36196644 to 36196648 4 + TSS region transcription start site region 113232
Lrrc72 12 36208345 to 36253398 45053 - protein coding gene leucine rich repeat containing 72
Cpgi4560 12 36208477 to 36208759 282 CpG island CpG island 4560
1700101O05Rik 12 36212310 to 36212434 124 unclassified gene RIKEN cDNA 1700101O05 gene
Tssr116139 12 36218172 to 36218187 15 - TSS region transcription start site region 116139
Tssr116140 12 36218188 to 36218205 17 - TSS region transcription start site region 116140
Gm40390 12 36249901 to 36253763 3862 + lncRNA gene predicted gene, 40390
Tssr116141 12 36253396 to 36253425 29 - TSS region transcription start site region 116141
Gm40392 12 36264963 to 36291019 26056 + lincRNA gene predicted gene, 40392
Tssr113233 12 36314137 to 36314148 11 + TSS region transcription start site region 113233
Tssr113234 12 36314160 to 36314171 11 + TSS region transcription start site region 113234
Sostdc1 12 36314169 to 36318452 4283 + protein coding gene sclerostin domain containing 1
Tssr113235 12 36314216 to 36314232 16 + TSS region transcription start site region 113235
Tssr113236 12 36314426 to 36314438 12 + TSS region transcription start site region 113236
Cpgi4561 12 36317050 to 36317555 505 CpG island CpG island 4561
Tssr113237 12 36326302 to 36326345 43 + TSS region transcription start site region 113237
Gm34215 12 36330333 to 36331900 1567 + lincRNA gene predicted gene, 34215
Gm25438 12 36373774 to 36373883 109 - snoRNA gene predicted gene, 25438
D630036H23Rik 12 36381242 to 36382181 939 - protein coding gene RIKEN cDNA D630036H23 gene
Cpgi4562 12 36381446 to 36382255 809 CpG island CpG island 4562
Crppa 12 36381450 to 36689503 308053 + protein coding gene CDP-L-ribitol pyrophosphorylase A
Tssr113238 12 36381548 to 36381594 46 + TSS region transcription start site region 113238
Tssr113239 12 36532790 to 36532799 9 + TSS region transcription start site region 113239
Gm7252 12 36539357 to 36539812 455 + pseudogene predicted gene 7252
Tssr3826 12 36569911 to 36569913 2 + TSS region transcription start site region 3826
Tssr113240 12 36607464 to 36607468 4 + TSS region transcription start site region 113240
Tssr116142 12 36627395 to 36627413 18 - TSS region transcription start site region 116142
Tssr113241 12 36676718 to 36676727 9 + TSS region transcription start site region 113241
Tssr113242 12 36676750 to 36676758 8 + TSS region transcription start site region 113242
Tssr113243 12 36677323 to 36677344 21 + TSS region transcription start site region 113243
Tssr113244 12 36677368 to 36677369 1 + TSS region transcription start site region 113244
Edlmmq10 12 36689834 to 36689834 0 QTL extensor digitorum longus muscle mass QTL 10
Tbqt3 12 109969809 to 35235497 -74734312 QTL tibia bone quality traits 3