Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:32410497-33230519

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4932429P19Rik 12 32428607 to 32431921 3314 unclassified gene RIKEN cDNA 4932429P19 gene
Gm17820 12 32486351 to 32487418 1067 - pseudogene predicted gene, 17820
Tssr116091 12 32487442 to 32487449 7 - TSS region transcription start site region 116091
Tssr116092 12 32569061 to 32569069 8 - TSS region transcription start site region 116092
Gm33380 12 32577719 to 32581504 3785 - lncRNA gene predicted gene, 33380
Gm18245 12 32672827 to 32673548 721 pseudogene predicted gene, 18245
Gm47937 12 32673180 to 32673294 114 - pseudogene predicted gene, 47937
Gm18726 12 32710161 to 32712532 2371 + pseudogene predicted gene, 18726
Gm40376 12 32724706 to 32771138 46432 + lncRNA gene predicted gene, 40376
Tssr113137 12 32724711 to 32724721 10 + TSS region transcription start site region 113137
Tssr113138 12 32724722 to 32724734 12 + TSS region transcription start site region 113138
Tssr3819 12 32767572 to 32767579 7 - TSS region transcription start site region 3819
Tssr116093 12 32770853 to 32770866 13 - TSS region transcription start site region 116093
Tssr3820 12 32770884 to 32770890 6 - TSS region transcription start site region 3820
Tssr116094 12 32770911 to 32770921 10 - TSS region transcription start site region 116094
Tssr116095 12 32770980 to 32770994 14 - TSS region transcription start site region 116095
Tssr116096 12 32816019 to 32816021 2 - TSS region transcription start site region 116096
Tssr113139 12 32819637 to 32819649 12 + TSS region transcription start site region 113139
Cpgi4542 12 32819803 to 32821218 1415 CpG island CpG island 4542
Tssr116097 12 32820057 to 32820076 19 - TSS region transcription start site region 116097
Tssr113140 12 32820231 to 32820245 14 + TSS region transcription start site region 113140
Tssr113141 12 32820304 to 32820362 58 + TSS region transcription start site region 113141
Nampt 12 32820335 to 32853369 33034 + protein coding gene nicotinamide phosphoribosyltransferase
Tssr113142 12 32820365 to 32820381 16 + TSS region transcription start site region 113142
Tssr113143 12 32820437 to 32820486 49 + TSS region transcription start site region 113143
Tssr113144 12 32820497 to 32820519 22 + TSS region transcription start site region 113144
Tssr113145 12 32820530 to 32820541 11 + TSS region transcription start site region 113145
Tssr113146 12 32820768 to 32820810 42 + TSS region transcription start site region 113146
Tssr113147 12 32820811 to 32820828 17 + TSS region transcription start site region 113147
Tssr113148 12 32821317 to 32821334 17 + TSS region transcription start site region 113148
Tssr113149 12 32821625 to 32821629 4 + TSS region transcription start site region 113149
Gdap10 12 32824116 to 32826919 2803 + lincRNA gene ganglioside-induced differentiation-associated-protein 10
Tssr113150 12 32830139 to 32830150 11 + TSS region transcription start site region 113150
Tssr113151 12 32830260 to 32830282 22 + TSS region transcription start site region 113151
Tssr113152 12 32831997 to 32832014 17 + TSS region transcription start site region 113152
Tssr113153 12 32834353 to 32834392 39 + TSS region transcription start site region 113153
Tssr113154 12 32835391 to 32835394 3 + TSS region transcription start site region 113154
Tssr113155 12 32839235 to 32839247 12 + TSS region transcription start site region 113155
Tssr113156 12 32840936 to 32840949 13 + TSS region transcription start site region 113156
Tssr113157 12 32841051 to 32841063 12 + TSS region transcription start site region 113157
Tssr113158 12 32848611 to 32848626 15 + TSS region transcription start site region 113158
Tssr113159 12 32848666 to 32848685 19 + TSS region transcription start site region 113159
Tssr113160 12 32850509 to 32850576 67 + TSS region transcription start site region 113160
Tssr113161 12 32850579 to 32850608 29 + TSS region transcription start site region 113161
Tssr113162 12 32850632 to 32850656 24 + TSS region transcription start site region 113162
Tssr113163 12 32850673 to 32850691 18 + TSS region transcription start site region 113163
Tssr113164 12 32850704 to 32850728 24 + TSS region transcription start site region 113164
Tssr113165 12 32850780 to 32850800 20 + TSS region transcription start site region 113165
Tssr113166 12 32851433 to 32851444 11 + TSS region transcription start site region 113166
Tssr116098 12 32851604 to 32851608 4 - TSS region transcription start site region 116098
Tssr113167 12 32859350 to 32859353 3 + TSS region transcription start site region 113167
Gm47948 12 32878305 to 32880411 2106 + lincRNA gene predicted gene, 47948
Gm33484 12 32888815 to 32909134 20319 - lncRNA gene predicted gene, 33484
Gm33441 12 32896391 to 32902386 5995 + lncRNA gene predicted gene, 33441
4933406C10Rik 12 32919384 to 32953789 34405 - lincRNA gene RIKEN cDNA 4933406C10 gene
Gm19056 12 32929151 to 32929947 796 - pseudogene predicted gene, 19056
Gm18622 12 32930155 to 32930715 560 + pseudogene predicted gene, 18622
Gm47961 12 32931480 to 32931732 252 - pseudogene predicted gene, 47961
Cpgi4543 12 32953484 to 32955047 1563 CpG island CpG island 4543
Tssr3821 12 32953717 to 32953725 8 - TSS region transcription start site region 3821
Tssr116099 12 32953772 to 32953846 74 - TSS region transcription start site region 116099
Tssr113168 12 32953855 to 32953870 15 + TSS region transcription start site region 113168
Sypl 12 32953873 to 32979502 25629 + protein coding gene synaptophysin-like protein
Tssr113169 12 32953874 to 32953891 17 + TSS region transcription start site region 113169
Tssr113170 12 32953914 to 32953936 22 + TSS region transcription start site region 113170
Tssr113171 12 32954179 to 32954278 99 + TSS region transcription start site region 113171
Tssr113172 12 32954280 to 32954292 12 + TSS region transcription start site region 113172
Tssr113173 12 32954300 to 32954306 6 + TSS region transcription start site region 113173
Tssr113174 12 32954559 to 32954573 14 + TSS region transcription start site region 113174
Tssr3822 12 32995731 to 32995783 52 + TSS region transcription start site region 3822
Gm40874 12 32996038 to 33042444 46406 + lncRNA gene predicted gene, 40874
Gm24922 12 32999909 to 33000010 101 - snRNA gene predicted gene, 24922
Cdhr3 12 33033796 to 33092875 59079 - protein coding gene cadherin-related family member 3
Tssr116100 12 33061764 to 33061802 38 - TSS region transcription start site region 116100
Tssr116101 12 33061806 to 33061818 12 - TSS region transcription start site region 116101
Gm22904 12 33062441 to 33062600 159 + miRNA gene predicted gene, 22904
Tssr116102 12 33092883 to 33092902 19 - TSS region transcription start site region 116102
F730043M19Rik 12 33111711 to 33147586 35875 - bidirectional promoter lncRNA gene RIKEN cDNA F730043M19 gene
Gm16267 12 33111962 to 33138945 26983 + lincRNA gene predicted gene 16267
Cpgi4544 12 33146836 to 33148146 1310 CpG island CpG island 4544
Tssr113175 12 33146956 to 33146994 38 + TSS region transcription start site region 113175
Tssr113176 12 33146995 to 33147004 9 + TSS region transcription start site region 113176
Tssr116103 12 33147543 to 33147590 47 - TSS region transcription start site region 116103
Tssr116104 12 33147591 to 33147617 26 - TSS region transcription start site region 116104
Atxn7l1 12 33147693 to 33373185 225492 + protein coding gene ataxin 7-like 1
Tssr113177 12 33147700 to 33147716 16 + TSS region transcription start site region 113177
Tssr113178 12 33147755 to 33147770 15 + TSS region transcription start site region 113178
Tssr113179 12 33147771 to 33147820 49 + TSS region transcription start site region 113179
Cpgi4545 12 33175951 to 33176215 264 CpG island CpG island 4545
D12Mit146 12 33188578 to 33188729 151 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 146
Atxn7l1os1 12 33193994 to 33228854 34860 - antisense lncRNA gene ataxin 7-like 1, opposite strand 1
Tssr113180 12 33207670 to 33207671 1 + TSS region transcription start site region 113180