Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:25204764-26435541

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36287 12 25150915 to 25209377 58462 + lincRNA gene predicted gene, 36287
Gm36441 12 25207602 to 25214605 7003 - lncRNA gene predicted gene, 36441
Tssr115892 12 25241989 to 25242024 35 - TSS region transcription start site region 115892
Tssr112986 12 25254763 to 25254804 41 + TSS region transcription start site region 112986
Tssr112987 12 25254951 to 25254963 12 + TSS region transcription start site region 112987
Tssr115893 12 25272832 to 25272852 20 - TSS region transcription start site region 115893
Gm19340 12 25282595 to 25282939 344 + pseudogene predicted gene, 19340
Tssr112988 12 25285098 to 25285105 7 + TSS region transcription start site region 112988
Gm47713 12 25300071 to 25304613 4542 - lincRNA gene predicted gene, 47713
D12Mit105 12 25302445 to 25302582 137 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 105
Cd4ts5 12 25302445 to 25302582 137 QTL CD4 T cell subset 5
Gm46343 12 25303617 to 25311245 7628 + lncRNA gene predicted gene, 46343
Tssr112989 12 25303753 to 25303758 5 + TSS region transcription start site region 112989
Tssr112990 12 25316186 to 25316198 12 + TSS region transcription start site region 112990
Tssr112991 12 25318137 to 25318148 11 + TSS region transcription start site region 112991
Tssr112992 12 25318150 to 25318163 13 + TSS region transcription start site region 112992
Tssr115894 12 25319984 to 25319992 8 - TSS region transcription start site region 115894
Tssr112993 12 25320802 to 25320811 9 + TSS region transcription start site region 112993
Tssr112994 12 25320812 to 25320824 12 + TSS region transcription start site region 112994
Tssr112995 12 25335325 to 25335338 13 + TSS region transcription start site region 112995
Gm36723 12 25355902 to 25471867 115965 + lincRNA gene predicted gene, 36723
Tssr112996 12 25381959 to 25381972 13 + TSS region transcription start site region 112996
Tssr3813 12 25382014 to 25382023 9 + TSS region transcription start site region 3813
Tssr115895 12 25396859 to 25396860 1 - TSS region transcription start site region 115895
Gm36886 12 25474675 to 25480258 5583 + lncRNA gene predicted gene, 36886
Gm22527 12 25687801 to 25687906 105 + rRNA gene predicted gene, 22527
Gm9321 12 25819764 to 25820541 777 - pseudogene predicted gene 9321
Gm47733 12 25871153 to 25871561 408 + lincRNA gene predicted gene, 47733
Gm29835 12 25979043 to 25991775 12732 + lncRNA gene predicted gene, 29835
Gm29687 12 26091962 to 26210505 118543 - lincRNA gene predicted gene, 29687
Gm47750 12 26150316 to 26150513 197 + pseudogene predicted gene, 47750
Tssr115896 12 26187553 to 26187582 29 - TSS region transcription start site region 115896
Tssr3814 12 26187733 to 26187740 7 + TSS region transcription start site region 3814
4930480M12Rik 12 26211267 to 26240707 29440 + lincRNA gene RIKEN cDNA 4930480M12 gene
D12Mit83 12 26235177 to 26235321 144 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 83
Gm29968 12 26235530 to 26252545 17015 - lincRNA gene predicted gene, 29968
Rnf144a 12 26306794 to 26415320 108526 - protein coding gene ring finger protein 144A
Tssr115897 12 26346589 to 26346608 19 - TSS region transcription start site region 115897
4930549C15Rik 12 26346717 to 26371748 25031 + antisense lncRNA gene RIKEN cDNA 4930549C15 gene
Tssr112997 12 26346731 to 26346743 12 + TSS region transcription start site region 112997
Tssr115898 12 26413998 to 26414013 15 - TSS region transcription start site region 115898
Cpgi4504 12 26414421 to 26415663 1242 CpG island CpG island 4504
Mir6538 12 26414901 to 26415010 109 - miRNA gene microRNA 6538
Tssr115899 12 26415199 to 26415214 15 - TSS region transcription start site region 115899
Tssr115900 12 26415228 to 26415242 14 - TSS region transcription start site region 115900
Tssr115901 12 26415257 to 26415303 46 - TSS region transcription start site region 115901
Gm47799 12 26431153 to 26436819 5666 - pseudogene predicted gene, 47799