Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:12680723-12959248

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm27952 12 12682514 to 12682618 104 - rRNA gene predicted gene, 27952
Gm34696 12 12688361 to 12704861 16500 - lncRNA gene predicted gene, 34696
Gm25538 12 12700039 to 12700145 106 + snRNA gene predicted gene, 25538
Gm40269 12 12708261 to 12711956 3695 - lncRNA gene predicted gene, 40269
Gm40270 12 12722319 to 12725258 2939 - lncRNA gene predicted gene, 40270
3732407C23Rik 12 12722861 to 12726400 3539 + unclassified gene RIKEN cDNA 3732407C23 gene
D12Ertd208e 12 12735085 to 12735328 243 DNA segment DNA segment, Chr 12, ERATO Doi 208, expressed
Gm35104 12 12765994 to 12774296 8302 + lncRNA gene predicted gene, 35104
Tssr112813 12 12766009 to 12766020 11 + TSS region transcription start site region 112813
Tssr112814 12 12766028 to 12766031 3 + TSS region transcription start site region 112814
Tssr112815 12 12784669 to 12784680 11 + TSS region transcription start site region 112815
Platr19 12 12787985 to 12794285 6300 + lincRNA gene pluripotency associated transcript 19
Tssr115760 12 12788667 to 12788681 14 - TSS region transcription start site region 115760
Tssr115761 12 12788694 to 12788704 10 - TSS region transcription start site region 115761
Gm35155 12 12810723 to 12829248 18525 + lncRNA gene predicted gene, 35155
Tssr112816 12 12828035 to 12828069 34 + TSS region transcription start site region 112816
Tssr115762 12 12850714 to 12850723 9 - TSS region transcription start site region 115762
Gm48187 12 12865570 to 12874689 9119 + lincRNA gene predicted gene, 48187
4930519A11Rik 12 12902720 to 12907378 4658 + lincRNA gene RIKEN cDNA 4930519A11 gene
Cpgi4425 12 12904491 to 12905032 541 CpG island CpG island 4425
Tssr112817 12 12909397 to 12909409 12 + TSS region transcription start site region 112817
Tssr112818 12 12909412 to 12909431 19 + TSS region transcription start site region 112818
Gm40271 12 12909428 to 12913029 3601 + lincRNA gene predicted gene, 40271
Rpl36-ps3 12 12912022 to 12912336 314 + pseudogene ribosomal protein L36, pseudogene 3
Mycn 12 12936093 to 12941836 5743 - protein coding gene v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
Tssr115763 12 12936944 to 12936948 4 - TSS region transcription start site region 115763
Cpgi4426 12 12937030 to 12937650 620 CpG island CpG island 4426
Tssr115764 12 12937270 to 12937281 11 - TSS region transcription start site region 115764
Tssr115765 12 12937981 to 12937989 8 - TSS region transcription start site region 115765
Tssr115766 12 12938252 to 12938255 3 - TSS region transcription start site region 115766
Tssr115767 12 12938442 to 12938458 16 - TSS region transcription start site region 115767
Tssr115768 12 12938740 to 12938752 12 - TSS region transcription start site region 115768
Cpgi4427 12 12939553 to 12940478 925 CpG island CpG island 4427
Tssr115769 12 12939645 to 12939658 13 - TSS region transcription start site region 115769
Tssr115770 12 12939861 to 12939878 17 - TSS region transcription start site region 115770
Tssr115771 12 12940376 to 12940388 12 - TSS region transcription start site region 115771
Tssr115772 12 12940393 to 12940407 14 - TSS region transcription start site region 115772
Tssr115773 12 12940600 to 12940612 12 - TSS region transcription start site region 115773
Cpgi4428 12 12940889 to 12941967 1078 CpG island CpG island 4428
Tssr115774 12 12941441 to 12941443 2 - TSS region transcription start site region 115774
Tssr115775 12 12941827 to 12941845 18 - TSS region transcription start site region 115775
Cpgi4429 12 12942159 to 12943017 858 CpG island CpG island 4429
Tssr112819 12 12942561 to 12942574 13 + TSS region transcription start site region 112819
Tssr115776 12 12943100 to 12943112 12 - TSS region transcription start site region 115776
Gm48201 12 12949289 to 12949535 246 - pseudogene predicted gene, 48201