Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 12:104809531-105229557

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clmn 12 104763117 to 104865076 101959 - protein coding gene calmin
Tssr114886 12 104819234 to 104819258 24 + TSS region transcription start site region 114886
Tssr114887 12 104820279 to 104820324 45 + TSS region transcription start site region 114887
Tssr117583 12 104856492 to 104856505 13 - TSS region transcription start site region 117583
Tssr117584 12 104856629 to 104856636 7 - TSS region transcription start site region 117584
Tssr114888 12 104857079 to 104857085 6 + TSS region transcription start site region 114888
4930408O17Rik 12 104857371 to 104871535 14164 + lincRNA gene RIKEN cDNA 4930408O17 gene
Tssr114889 12 104862066 to 104862076 10 + TSS region transcription start site region 114889
Tssr3933 12 104862089 to 104862096 7 + TSS region transcription start site region 3933
Cpgi5036 12 104864389 to 104865635 1246 CpG island CpG island 5036
Tssr117585 12 104864957 to 104864991 34 - TSS region transcription start site region 117585
Tssr117586 12 104865007 to 104865029 22 - TSS region transcription start site region 117586
Tssr117587 12 104865038 to 104865052 14 - TSS region transcription start site region 117587
Tssr117588 12 104865082 to 104865138 56 - TSS region transcription start site region 117588
Tssr117589 12 104865150 to 104865163 13 - TSS region transcription start site region 117589
Tssr117590 12 104865189 to 104865198 9 - TSS region transcription start site region 117590
Tssr114890 12 104865376 to 104865400 24 + TSS region transcription start site region 114890
Gm28875 12 104925501 to 104926689 1188 - lincRNA gene predicted gene 28875
Tssr117591 12 104926836 to 104926839 3 - TSS region transcription start site region 117591
Syne3 12 104929933 to 105009809 79876 - protein coding gene spectrin repeat containing, nuclear envelope family member 3
Tssr117592 12 104930051 to 104930074 23 - TSS region transcription start site region 117592
Tssr3934 12 104956259 to 104956262 3 - TSS region transcription start site region 3934
Tssr117593 12 104988270 to 104988273 3 - TSS region transcription start site region 117593
Tssr3935 12 104988762 to 104988766 4 - TSS region transcription start site region 3935
Tssr114891 12 104992583 to 104992594 11 + TSS region transcription start site region 114891
Tssr117594 12 104998682 to 104998710 28 - TSS region transcription start site region 117594
Tssr114892 12 105001198 to 105001247 49 + TSS region transcription start site region 114892
Tssr114893 12 105003443 to 105003461 18 + TSS region transcription start site region 114893
Gm31742 12 105003565 to 105007957 4392 + lncRNA gene predicted gene, 31742
Tssr117595 12 105006872 to 105006876 4 - TSS region transcription start site region 117595
Cpgi5037 12 105009405 to 105010415 1010 CpG island CpG island 5037
Tssr117596 12 105010005 to 105010021 16 - TSS region transcription start site region 117596
Tssr117597 12 105010023 to 105010059 36 - TSS region transcription start site region 117597
Tssr117598 12 105010062 to 105010086 24 - TSS region transcription start site region 117598
Gm46375 12 105012683 to 105023679 10996 - lncRNA gene predicted gene, 46375
Tssr3936 12 105013113 to 105013140 27 - TSS region transcription start site region 3936
Tssr114894 12 105019496 to 105019506 10 + TSS region transcription start site region 114894
Tssr114895 12 105019531 to 105019557 26 + TSS region transcription start site region 114895
Tssr114896 12 105020113 to 105020143 30 + TSS region transcription start site region 114896
Gm47648 12 105021359 to 105029936 8577 + lincRNA gene predicted gene, 47648
Gm47650 12 105027642 to 105027963 321 - pseudogene predicted gene, 47650
Snhg10 12 105030617 to 105032279 1662 - lncRNA gene small nucleolar RNA host gene 10
Scarna13 12 105031075 to 105031349 274 - snoRNA gene small Cajal body-specific RNA 1
Mir3069 12 105031077 to 105031141 64 - miRNA gene microRNA 3069
Cpgi5038 12 105032019 to 105033250 1231 CpG island CpG island 5038
Tssr117599 12 105032056 to 105032060 4 - TSS region transcription start site region 117599
Tssr117600 12 105032240 to 105032258 18 - TSS region transcription start site region 117600
Tssr117601 12 105032261 to 105032307 46 - TSS region transcription start site region 117601
Glrx5 12 105032618 to 105040911 8293 + protein coding gene glutaredoxin 5
Tssr114897 12 105032638 to 105032705 67 + TSS region transcription start site region 114897
Gm46374 12 105036168 to 105040268 4100 - lncRNA gene predicted gene, 46374
D12Mit29 12 105039595 to 105039857 262 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 29
Gm31884 12 105047904 to 105053457 5553 + lncRNA gene predicted gene, 31884
Gm31829 12 105058207 to 105102983 44776 - lncRNA gene predicted gene, 31829
Chlq17 12 105086615 to 105086762 147 QTL circulating hormone level QTL 17
Lifespan3 12 105086615 to 105086762 147 QTL life span 3
D12Mit167 12 105086615 to 105086762 147 DNA segment DNA segment, Chr 12, Massachusetts Institute of Technology 167
Gm32062 12 105120261 to 105138103 17842 + lncRNA gene predicted gene, 32062
Gm47672 12 105135196 to 105135441 245 + pseudogene predicted gene, 47672
Tcl1b2 12 105147012 to 105155225 8213 + protein coding gene T cell leukemia/lymphoma 1B, 2
Tcl1b1 12 105159704 to 105166625 6921 + protein coding gene T cell leukemia/lymphoma 1B, 1
Tcl1b5 12 105176358 to 105181145 4787 + protein coding gene T cell leukemia/lymphoma 1B, 5
Tcl1b3 12 105191045 to 105195399 4354 + protein coding gene T cell leukemia/lymphoma 1B, 3
Tcl1b4 12 105201957 to 105206993 5036 + protein coding gene T cell leukemia/lymphoma 1B, 4
Tcl1 12 105216753 to 105222737 5984 - protein coding gene T cell lymphoma breakpoint 1
Tssr117602 12 105222712 to 105222722 10 - TSS region transcription start site region 117602
Tssr117603 12 105222734 to 105222745 11 - TSS region transcription start site region 117603
Tssr117604 12 105222761 to 105222772 11 - TSS region transcription start site region 117604