Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98960516-99677941

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230 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae7 11 77683047 to 99486994 21803947 QTL experimental allergic encephalomyelitis susceptibility 7
Abbp4 11 88808762 to 99190771 10382009 QTL A/J and C57BL/6 blood pressure 4
Estq3 11 97006867 to 99436202 2429335 QTL estradiol regulated response QTL 3
Rara 11 98927818 to 98974942 47124 + protein coding gene retinoic acid receptor, alpha
Cpgi3784 11 98959519 to 98961334 1815 CpG island CpG island 3784
Tssr104830 11 98960544 to 98960593 49 + TSS region transcription start site region 104830
Tssr104831 11 98960603 to 98960620 17 + TSS region transcription start site region 104831
Tssr104832 11 98960623 to 98960673 50 + TSS region transcription start site region 104832
Tssr104833 11 98960733 to 98960758 25 + TSS region transcription start site region 104833
Tssr104834 11 98960767 to 98960778 11 + TSS region transcription start site region 104834
Tssr104835 11 98960779 to 98960790 11 + TSS region transcription start site region 104835
Tssr110608 11 98961528 to 98961549 21 - TSS region transcription start site region 110608
Cpgi3785 11 98963500 to 98963916 416 CpG island CpG island 3785
Tssr104836 11 98964811 to 98964827 16 + TSS region transcription start site region 104836
Tssr104837 11 98964864 to 98964883 19 + TSS region transcription start site region 104837
Tssr104838 11 98964902 to 98964913 11 + TSS region transcription start site region 104838
Tssr110609 11 98968745 to 98968757 12 - TSS region transcription start site region 110609
Tssr110610 11 98968778 to 98968795 17 - TSS region transcription start site region 110610
Tssr110611 11 98968800 to 98968809 9 - TSS region transcription start site region 110611
Tssr104839 11 98974588 to 98974603 15 + TSS region transcription start site region 104839
Cpgi3786 11 98981547 to 98983409 1862 CpG island CpG island 3786
Gjd3 11 98982180 to 98983016 836 - protein coding gene gap junction protein, delta 3
Top2a 11 98992943 to 99024189 31246 - protein coding gene topoisomerase (DNA) II alpha
Tssr110612 11 98993712 to 98993715 3 - TSS region transcription start site region 110612
Tssr110613 11 98999227 to 98999240 13 - TSS region transcription start site region 110613
Gm26394 11 98999508 to 98999622 114 + snoRNA gene predicted gene, 26394
Tssr110614 11 99001053 to 99001070 17 - TSS region transcription start site region 110614
Tssr110615 11 99001394 to 99001397 3 - TSS region transcription start site region 110615
Tssr110616 11 99003042 to 99003071 29 - TSS region transcription start site region 110616
Tssr110617 11 99003559 to 99003563 4 - TSS region transcription start site region 110617
Gm23451 11 99017031 to 99017152 121 - snoRNA gene predicted gene, 23451
Cpgi3787 11 99023626 to 99024459 833 CpG island CpG island 3787
Tssr110618 11 99024179 to 99024197 18 - TSS region transcription start site region 110618
Cpgi3788 11 99040780 to 99042067 1287 CpG island CpG island 3788
Tssr104840 11 99041237 to 99041254 17 + TSS region transcription start site region 104840
Igfbp4 11 99041260 to 99052646 11386 + protein coding gene insulin-like growth factor binding protein 4
Tssr104841 11 99041262 to 99041267 5 + TSS region transcription start site region 104841
Tssr104842 11 99041897 to 99041938 41 + TSS region transcription start site region 104842
Tssr104843 11 99045124 to 99045129 5 + TSS region transcription start site region 104843
Tssr104844 11 99047315 to 99047326 11 + TSS region transcription start site region 104844
Tssr104845 11 99048079 to 99048116 37 + TSS region transcription start site region 104845
Tssr104846 11 99051439 to 99051453 14 + TSS region transcription start site region 104846
Tssr110619 11 99051466 to 99051504 38 - TSS region transcription start site region 110619
Tssr104847 11 99051533 to 99051545 12 + TSS region transcription start site region 104847
Tssr104848 11 99051629 to 99051693 64 + TSS region transcription start site region 104848
Tssr104849 11 99051796 to 99051818 22 + TSS region transcription start site region 104849
Tssr104850 11 99052109 to 99052135 26 + TSS region transcription start site region 104850
Tssr104851 11 99052179 to 99052190 11 + TSS region transcription start site region 104851
Tssr104852 11 99052312 to 99052338 26 + TSS region transcription start site region 104852
Tns4 11 99065678 to 99089306 23628 - protein coding gene tensin 4
Tssr110620 11 99073928 to 99073966 38 - TSS region transcription start site region 110620
Tssr110621 11 99089262 to 99089275 13 - TSS region transcription start site region 110621
Tssr110622 11 99089276 to 99089289 13 - TSS region transcription start site region 110622
Tssr110623 11 99089296 to 99089318 22 - TSS region transcription start site region 110623
Tssr104853 11 99109563 to 99109602 39 + TSS region transcription start site region 104853
Tssr110624 11 99132515 to 99132550 35 - TSS region transcription start site region 110624
Tssr110625 11 99141697 to 99141717 20 - TSS region transcription start site region 110625
Ccr7 11 99144199 to 99155077 10878 - protein coding gene chemokine (C-C motif) receptor 7
Tssr110626 11 99145076 to 99145096 20 - TSS region transcription start site region 110626
Tssr110627 11 99152256 to 99152262 6 - TSS region transcription start site region 110627
Tssr110628 11 99154016 to 99154027 11 - TSS region transcription start site region 110628
Tssr110629 11 99155018 to 99155037 19 - TSS region transcription start site region 110629
Tssr110630 11 99155067 to 99155085 18 - TSS region transcription start site region 110630
Tssr104854 11 99155172 to 99155185 13 + TSS region transcription start site region 104854
Tssr104855 11 99155219 to 99155230 11 + TSS region transcription start site region 104855
Tssr104856 11 99155231 to 99155244 13 + TSS region transcription start site region 104856
Tssr104857 11 99155270 to 99155284 14 + TSS region transcription start site region 104857
Tssr104858 11 99155313 to 99155322 9 + TSS region transcription start site region 104858
Tssr104859 11 99155398 to 99155410 12 + TSS region transcription start site region 104859
Tssr110631 11 99168007 to 99168038 31 - TSS region transcription start site region 110631
Tssr104860 11 99168125 to 99168159 34 + TSS region transcription start site region 104860
Gm32249 11 99168148 to 99171760 3612 + lncRNA gene predicted gene, 32249
Tssr104861 11 99168304 to 99168327 23 + TSS region transcription start site region 104861
Tssr104862 11 99168331 to 99168356 25 + TSS region transcription start site region 104862
Tssr104863 11 99168363 to 99168376 13 + TSS region transcription start site region 104863
Tssr104864 11 99168397 to 99168414 17 + TSS region transcription start site region 104864
Tssr104865 11 99168526 to 99168535 9 + TSS region transcription start site region 104865
Tssr110632 11 99170829 to 99170839 10 - TSS region transcription start site region 110632
Tssr104866 11 99171113 to 99171124 11 + TSS region transcription start site region 104866
D11Mit124 11 99190655 to 99190771 116 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 124
Tssr110633 11 99200087 to 99200119 32 - TSS region transcription start site region 110633
Smarce1 11 99209047 to 99231017 21970 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Tssr110634 11 99209511 to 99209537 26 - TSS region transcription start site region 110634
Tssr110635 11 99209993 to 99209999 6 - TSS region transcription start site region 110635
Cpgi3789 11 99229960 to 99231201 1241 CpG island CpG island 3789
Tssr110636 11 99230430 to 99230464 34 - TSS region transcription start site region 110636
Tssr110637 11 99230688 to 99230704 16 - TSS region transcription start site region 110637
Tssr110638 11 99230890 to 99230901 11 - TSS region transcription start site region 110638
Tssr110639 11 99230919 to 99230959 40 - TSS region transcription start site region 110639
Tssr110640 11 99230966 to 99230988 22 - TSS region transcription start site region 110640
Tssr110641 11 99230998 to 99231019 21 - TSS region transcription start site region 110641
Krt222 11 99232761 to 99244085 11324 - protein coding gene keratin 222
Cpgi3790 11 99238485 to 99238750 265 CpG island CpG island 3790
D11Mit249 11 99241471 to 99241580 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 249
Gm32385 11 99243895 to 99304714 60819 + lncRNA gene predicted gene, 32385
Cpgi3791 11 99243953 to 99244135 182 CpG island CpG island 3791
Tssr110642 11 99244058 to 99244136 78 - TSS region transcription start site region 110642
Krt24 11 99280093 to 99285238 5145 - protein coding gene keratin 24
Tssr104867 11 99280223 to 99280251 28 + TSS region transcription start site region 104867
Tssr110643 11 99285260 to 99285264 4 - TSS region transcription start site region 110643
Gm12358 11 99305148 to 99306140 992 - pseudogene predicted gene 12358
Krt25 11 99315516 to 99322941 7425 - protein coding gene keratin 25
Tssr110644 11 99318586 to 99318608 22 - TSS region transcription start site region 110644
Tssr110645 11 99321201 to 99321216 15 - TSS region transcription start site region 110645
Gm32502 11 99322334 to 99333259 10925 + lncRNA gene predicted gene, 32502
Cpgi3792 11 99322724 to 99322879 155 CpG island CpG island 3792
Tssr110646 11 99322943 to 99322957 14 - TSS region transcription start site region 110646
Krt26 11 99328550 to 99337966 9416 - protein coding gene keratin 26
Tssr110647 11 99337930 to 99337967 37 - TSS region transcription start site region 110647
Krt27 11 99345565 to 99351104 5539 - protein coding gene keratin 27
Tssr110648 11 99346535 to 99346539 4 - TSS region transcription start site region 110648
Cpgi3793 11 99348834 to 99349132 298 CpG island CpG island 3793
Tssr110649 11 99350003 to 99350019 16 - TSS region transcription start site region 110649
Cpgi3794 11 99350858 to 99351124 266 CpG island CpG island 3794
Tssr110650 11 99351086 to 99351113 27 - TSS region transcription start site region 110650
Krt28 11 99365007 to 99374903 9896 - protein coding gene keratin 28
Tssr110651 11 99366099 to 99366115 16 - TSS region transcription start site region 110651
Cpgi3795 11 99371199 to 99371469 270 CpG island CpG island 3795
Cpgi3796 11 99374722 to 99374900 178 CpG island CpG island 3796
Tssr110652 11 99374895 to 99374909 14 - TSS region transcription start site region 110652
Krt10 11 99385254 to 99389364 4110 - protein coding gene keratin 10
Tssr110653 11 99385279 to 99385303 24 - TSS region transcription start site region 110653
Tssr110654 11 99385326 to 99385339 13 - TSS region transcription start site region 110654
Tssr104868 11 99385587 to 99385601 14 + TSS region transcription start site region 104868
Cpgi3797 11 99385871 to 99386726 855 CpG island CpG island 3797
Tssr110655 11 99386042 to 99386086 44 - TSS region transcription start site region 110655
Tssr110656 11 99386087 to 99386099 12 - TSS region transcription start site region 110656
Tssr110657 11 99386100 to 99386160 60 - TSS region transcription start site region 110657
Tssr110658 11 99386582 to 99386699 117 - TSS region transcription start site region 110658
Tssr110659 11 99387124 to 99387135 11 - TSS region transcription start site region 110659
Tssr110660 11 99387315 to 99387332 17 - TSS region transcription start site region 110660
Tssr104869 11 99387332 to 99387345 13 + TSS region transcription start site region 104869
Gm11940 11 99387340 to 99387897 557 + antisense lncRNA gene predicted gene 11940
Tssr110661 11 99387634 to 99387660 26 - TSS region transcription start site region 110661
Tssr110662 11 99388067 to 99388101 34 - TSS region transcription start site region 110662
Tssr104870 11 99388740 to 99388753 13 + TSS region transcription start site region 104870
Tssr104871 11 99388786 to 99388853 67 + TSS region transcription start site region 104871
Tssr104872 11 99388972 to 99388983 11 + TSS region transcription start site region 104872
Tssr104873 11 99388985 to 99389009 24 + TSS region transcription start site region 104873
Tssr104874 11 99389047 to 99389062 15 + TSS region transcription start site region 104874
Tssr3665 11 99389075 to 99389084 9 + TSS region transcription start site region 3665
Tssr104875 11 99389085 to 99389129 44 + TSS region transcription start site region 104875
Tssr110663 11 99389351 to 99389369 18 - TSS region transcription start site region 110663
Tssr104876 11 99391214 to 99391220 6 + TSS region transcription start site region 104876
Tssr110664 11 99405835 to 99405840 5 - TSS region transcription start site region 110664
Krt12 11 99415666 to 99422259 6593 - protein coding gene keratin 12
A830036E02Rik 11 99416956 to 99425497 8541 + antisense lncRNA gene RIKEN cDNA A830036E02 gene
Tssr110665 11 99416969 to 99416987 18 - TSS region transcription start site region 110665
Tssr104877 11 99417141 to 99417152 11 + TSS region transcription start site region 104877
Tssr104878 11 99417222 to 99417268 46 + TSS region transcription start site region 104878
Tssr104879 11 99417275 to 99417307 32 + TSS region transcription start site region 104879
Cpgi3798 11 99417917 to 99418283 366 CpG island CpG island 3798
Tssr110666 11 99418390 to 99418427 37 - TSS region transcription start site region 110666
Tssr110667 11 99418428 to 99418440 12 - TSS region transcription start site region 110667
Tssr104880 11 99421013 to 99421017 4 + TSS region transcription start site region 104880
Tssr110668 11 99422252 to 99422260 8 - TSS region transcription start site region 110668
Krt20 11 99428403 to 99438150 9747 - protein coding gene keratin 20
Tssr110669 11 99428892 to 99428897 5 - TSS region transcription start site region 110669
Cpgi3799 11 99430772 to 99430951 179 CpG island CpG island 3799
Tssr110670 11 99432286 to 99432299 13 - TSS region transcription start site region 110670
Tssr110671 11 99432950 to 99432963 13 - TSS region transcription start site region 110671
Tssr110672 11 99433556 to 99433562 6 - TSS region transcription start site region 110672
D11Mit132 11 99436087 to 99436202 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 132
Cpgi3800 11 99437711 to 99438001 290 CpG island CpG island 3800
Tssr110673 11 99438143 to 99438159 16 - TSS region transcription start site region 110673
Krt23 11 99477973 to 99493110 15137 - protein coding gene keratin 23
Eae22 11 99486872 to 99486994 122 QTL experimental allergic encephalomyelitis susceptibility 22
D11Mit330 11 99486872 to 99486994 122 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 330
Tssr110674 11 99493112 to 99493129 17 - TSS region transcription start site region 110674
Krt39 11 99514624 to 99521258 6634 - protein coding gene keratin 39
Tssr110675 11 99521290 to 99521295 5 - TSS region transcription start site region 110675
Tssr110676 11 99521336 to 99521340 4 - TSS region transcription start site region 110676
Tssr110677 11 99521603 to 99521606 3 - TSS region transcription start site region 110677
D11Mit198 11 99525452 to 99525747 295 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 198
Tssr104881 11 99533462 to 99533468 6 + TSS region transcription start site region 104881
Krt40 11 99537485 to 99543158 5673 - protein coding gene keratin 40
Tssr110678 11 99543216 to 99543222 6 - TSS region transcription start site region 110678
Krtap3-3 11 99550132 to 99550863 731 - protein coding gene keratin associated protein 3-3
Tssr110679 11 99550861 to 99550867 6 - TSS region transcription start site region 110679
Krtap3-2 11 99555823 to 99556853 1030 - protein coding gene keratin associated protein 3-2
Tssr110680 11 99556846 to 99556858 12 - TSS region transcription start site region 110680
Gm11939 11 99559167 to 99559466 299 - protein coding gene predicted gene 11939
Tssr110681 11 99559505 to 99559512 7 - TSS region transcription start site region 110681
Krtap3-1 11 99566027 to 99566630 603 - protein coding gene keratin associated protein 3-1
Tssr3666 11 99566363 to 99566368 5 - TSS region transcription start site region 3666
Tssr110682 11 99566421 to 99566439 18 - TSS region transcription start site region 110682
Tssr110683 11 99566495 to 99566498 3 - TSS region transcription start site region 110683
Tssr110684 11 99566619 to 99566646 27 - TSS region transcription start site region 110684
Krtap1-5 11 99579977 to 99581016 1039 - protein coding gene keratin associated protein 1-5
Tssr104882 11 99580567 to 99580592 25 + TSS region transcription start site region 104882
Tssr110685 11 99580703 to 99580739 36 - TSS region transcription start site region 110685
Tssr110686 11 99581009 to 99581024 15 - TSS region transcription start site region 110686
Gm32730 11 99581773 to 99631259 49486 + lncRNA gene predicted gene, 32730
Krtap1-4 11 99583062 to 99583654 592 - protein coding gene keratin associated protein 1-4
Tssr110687 11 99583675 to 99583682 7 - TSS region transcription start site region 110687
Krtap1-3 11 99590461 to 99591339 878 - protein coding gene keratin associated protein 1-3
Tssr110688 11 99591375 to 99591380 5 - TSS region transcription start site region 110688
Krtap9-3 11 99597348 to 99598106 758 - protein coding gene keratin associated protein 9-3
Tssr110689 11 99598095 to 99598111 16 - TSS region transcription start site region 110689
Tssr110690 11 99598141 to 99598147 6 - TSS region transcription start site region 110690