Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98833661-99003690

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Casc3 11 98809808 to 98833807 23999 + protein coding gene cancer susceptibility candidate 3
Cpgi3775 11 98836588 to 98837612 1024 CpG island CpG island 3775
Tssr104802 11 98836762 to 98836771 9 + TSS region transcription start site region 104802
Tssr104803 11 98836775 to 98836831 56 + TSS region transcription start site region 104803
Rapgefl1 11 98836785 to 98853009 16224 + protein coding gene Rap guanine nucleotide exchange factor (GEF)-like 1
Tssr104804 11 98836836 to 98836859 23 + TSS region transcription start site region 104804
Tssr104805 11 98836867 to 98836878 11 + TSS region transcription start site region 104805
Tssr104806 11 98843798 to 98843800 2 + TSS region transcription start site region 104806
Cpgi3776 11 98845911 to 98846280 369 CpG island CpG island 3776
Cpgi3777 11 98849063 to 98849475 412 CpG island CpG island 3777
Cpgi3778 11 98863337 to 98864524 1187 CpG island CpG island 3778
Tssr104807 11 98863610 to 98863646 36 + TSS region transcription start site region 104807
Wipf2 11 98863638 to 98905040 41402 + protein coding gene WAS/WASL interacting protein family, member 2
Tssr104808 11 98863655 to 98863690 35 + TSS region transcription start site region 104808
Tssr104809 11 98863755 to 98863785 30 + TSS region transcription start site region 104809
Gm23640 11 98870396 to 98870499 103 - snRNA gene predicted gene, 23640
Tssr104810 11 98891183 to 98891201 18 + TSS region transcription start site region 104810
Tssr104811 11 98903201 to 98903214 13 + TSS region transcription start site region 104811
Cpgi3779 11 98907489 to 98908217 728 CpG island CpG island 3779
Cdc6 11 98907801 to 98923940 16139 + protein coding gene cell division cycle 6
Tssr104812 11 98907810 to 98907824 14 + TSS region transcription start site region 104812
Tssr104813 11 98907827 to 98907866 39 + TSS region transcription start site region 104813
Tssr104814 11 98918661 to 98918690 29 + TSS region transcription start site region 104814
Carg4 11 98919441 to 98919441 0 QTL Candida albicans resistance gene 4
Cpgi3780 11 98927682 to 98928232 550 CpG island CpG island 3780
Tssr104815 11 98927785 to 98927810 25 + TSS region transcription start site region 104815
Tssr3664 11 98927814 to 98927824 10 + TSS region transcription start site region 3664
Rara 11 98927818 to 98974942 47124 + protein coding gene retinoic acid receptor, alpha
Tssr104816 11 98927826 to 98927854 28 + TSS region transcription start site region 104816
Cpgi3781 11 98936159 to 98936674 515 CpG island CpG island 3781
Tssr104817 11 98937153 to 98937170 17 + TSS region transcription start site region 104817
Gm46294 11 98937275 to 98942287 5012 - protein coding gene predicted gene, 46294
Cpgi3782 11 98937286 to 98938404 1118 CpG island CpG island 3782
Tssr104818 11 98937669 to 98937735 66 + TSS region transcription start site region 104818
Tssr104819 11 98938376 to 98938387 11 + TSS region transcription start site region 104819
Tssr110604 11 98939610 to 98939623 13 - TSS region transcription start site region 110604
Tssr110605 11 98939649 to 98939679 30 - TSS region transcription start site region 110605
Tssr104820 11 98939898 to 98939910 12 + TSS region transcription start site region 104820
Tssr104821 11 98939914 to 98939944 30 + TSS region transcription start site region 104821
Tssr110606 11 98941907 to 98941932 25 - TSS region transcription start site region 110606
Tssr104822 11 98942387 to 98942396 9 + TSS region transcription start site region 104822
Tssr104823 11 98942487 to 98942499 12 + TSS region transcription start site region 104823
Tssr104824 11 98943473 to 98943505 32 + TSS region transcription start site region 104824
Tssr104825 11 98944199 to 98944243 44 + TSS region transcription start site region 104825
Tssr104826 11 98944426 to 98944457 31 + TSS region transcription start site region 104826
Gm22061 11 98946444 to 98946550 106 + snRNA gene predicted gene, 22061
Cpgi3783 11 98947977 to 98948226 249 CpG island CpG island 3783
Cpgi3784 11 98959519 to 98961334 1815 CpG island CpG island 3784
Tssr110607 11 98959523 to 98959527 4 - TSS region transcription start site region 110607
Tssr104827 11 98959756 to 98959771 15 + TSS region transcription start site region 104827
Tssr104828 11 98959782 to 98959801 19 + TSS region transcription start site region 104828
Tssr104829 11 98960435 to 98960485 50 + TSS region transcription start site region 104829
Tssr104830 11 98960544 to 98960593 49 + TSS region transcription start site region 104830
Tssr104831 11 98960603 to 98960620 17 + TSS region transcription start site region 104831
Tssr104832 11 98960623 to 98960673 50 + TSS region transcription start site region 104832
Tssr104833 11 98960733 to 98960758 25 + TSS region transcription start site region 104833
Tssr104834 11 98960767 to 98960778 11 + TSS region transcription start site region 104834
Tssr104835 11 98960779 to 98960790 11 + TSS region transcription start site region 104835
Tssr110608 11 98961528 to 98961549 21 - TSS region transcription start site region 110608
Cpgi3785 11 98963500 to 98963916 416 CpG island CpG island 3785
Tssr104836 11 98964811 to 98964827 16 + TSS region transcription start site region 104836
Tssr104837 11 98964864 to 98964883 19 + TSS region transcription start site region 104837
Tssr104838 11 98964902 to 98964913 11 + TSS region transcription start site region 104838
Tssr110609 11 98968745 to 98968757 12 - TSS region transcription start site region 110609
Tssr110610 11 98968778 to 98968795 17 - TSS region transcription start site region 110610
Tssr110611 11 98968800 to 98968809 9 - TSS region transcription start site region 110611
Tssr104839 11 98974588 to 98974603 15 + TSS region transcription start site region 104839
Cpgi3786 11 98981547 to 98983409 1862 CpG island CpG island 3786
Gjd3 11 98982180 to 98983016 836 - protein coding gene gap junction protein, delta 3
Top2a 11 98992943 to 99024189 31246 - protein coding gene topoisomerase (DNA) II alpha
Tssr110612 11 98993712 to 98993715 3 - TSS region transcription start site region 110612
Tssr110613 11 98999227 to 98999240 13 - TSS region transcription start site region 110613
Gm26394 11 98999508 to 98999622 114 + snoRNA gene predicted gene, 26394
Tssr110614 11 99001053 to 99001070 17 - TSS region transcription start site region 110614
Tssr110615 11 99001394 to 99001397 3 - TSS region transcription start site region 110615
Tssr110616 11 99003042 to 99003071 29 - TSS region transcription start site region 110616
Tssr110617 11 99003559 to 99003563 4 - TSS region transcription start site region 110617