Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:98690658-98790672

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psmd3 11 98682554 to 98695978 13424 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
Gm38985 11 98696060 to 98701655 5595 - lncRNA gene predicted gene, 38985
Tssr104770 11 98700165 to 98700206 41 + TSS region transcription start site region 104770
Tssr104771 11 98700332 to 98700370 38 + TSS region transcription start site region 104771
Csf3 11 98701263 to 98703629 2366 + protein coding gene colony stimulating factor 3 (granulocyte)
Tssr104772 11 98701342 to 98701346 4 + TSS region transcription start site region 104772
Med24 11 98704591 to 98729435 24844 - protein coding gene mediator complex subunit 24
Tssr110580 11 98706554 to 98706570 16 - TSS region transcription start site region 110580
Tssr110581 11 98707570 to 98707582 12 - TSS region transcription start site region 110581
Tssr110582 11 98707645 to 98707656 11 - TSS region transcription start site region 110582
Tssr110583 11 98707736 to 98707743 7 - TSS region transcription start site region 110583
Tssr110584 11 98707757 to 98707777 20 - TSS region transcription start site region 110584
Gm22059 11 98710986 to 98711089 103 - snoRNA gene predicted gene, 22059
Gm31252 11 98719271 to 98726857 7586 + pseudogene predicted gene, 31252
Tssr110585 11 98729401 to 98729432 31 - TSS region transcription start site region 110585
Tssr104773 11 98740595 to 98740608 13 + TSS region transcription start site region 104773
Tssr104774 11 98740658 to 98740672 14 + TSS region transcription start site region 104774
Cpgi3766 11 98740711 to 98740979 268 CpG island CpG island 3766
Tssr104775 11 98740889 to 98740952 63 + TSS region transcription start site region 104775
Cpgi3767 11 98741369 to 98742814 1445 CpG island CpG island 3767
Thra 11 98741776 to 98769006 27230 + protein coding gene thyroid hormone receptor alpha
Tssr104776 11 98741805 to 98741816 11 + TSS region transcription start site region 104776
Tssr104777 11 98741846 to 98741857 11 + TSS region transcription start site region 104777
Tssr104778 11 98741871 to 98741894 23 + TSS region transcription start site region 104778
Tssr104779 11 98742127 to 98742147 20 + TSS region transcription start site region 104779
Tssr104780 11 98744203 to 98744225 22 + TSS region transcription start site region 104780
Tssr110586 11 98750506 to 98750528 22 - TSS region transcription start site region 110586
Tssr104781 11 98753021 to 98753035 14 + TSS region transcription start site region 104781
Tssr104782 11 98753383 to 98753393 10 + TSS region transcription start site region 104782
Tssr104783 11 98753512 to 98753531 19 + TSS region transcription start site region 104783
Tssr104784 11 98763505 to 98763529 24 + TSS region transcription start site region 104784
Tssr104785 11 98764972 to 98765022 50 + TSS region transcription start site region 104785
Tssr104786 11 98766258 to 98766277 19 + TSS region transcription start site region 104786
Tssr104787 11 98766314 to 98766347 33 + TSS region transcription start site region 104787
Nr1d1 11 98767932 to 98775333 7401 - protein coding gene nuclear receptor subfamily 1, group D, member 1
Cpgi3768 11 98768215 to 98768728 513 CpG island CpG island 3768
Tssr110587 11 98768224 to 98768237 13 - TSS region transcription start site region 110587
Tssr110588 11 98770317 to 98770353 36 - TSS region transcription start site region 110588
Tssr110589 11 98772120 to 98772132 12 - TSS region transcription start site region 110589
Tssr110590 11 98772951 to 98772971 20 - TSS region transcription start site region 110590
Cpgi3769 11 98773716 to 98774332 616 CpG island CpG island 3769
Tssr110591 11 98773742 to 98773764 22 - TSS region transcription start site region 110591
Tssr110592 11 98774015 to 98774026 11 - TSS region transcription start site region 110592
Tssr110593 11 98774032 to 98774043 11 - TSS region transcription start site region 110593
Tssr110594 11 98775007 to 98775018 11 - TSS region transcription start site region 110594
Tssr110595 11 98775059 to 98775073 14 - TSS region transcription start site region 110595
Tssr110596 11 98775086 to 98775104 18 - TSS region transcription start site region 110596
Cpgi3770 11 98775158 to 98775550 392 CpG island CpG island 3770
Tssr110597 11 98775194 to 98775210 16 - TSS region transcription start site region 110597
Tssr110598 11 98775217 to 98775245 28 - TSS region transcription start site region 110598
Tssr110599 11 98775254 to 98775260 6 - TSS region transcription start site region 110599
Tssr110600 11 98775261 to 98775293 32 - TSS region transcription start site region 110600
Tssr110601 11 98775343 to 98775354 11 - TSS region transcription start site region 110601
Tssr110602 11 98775371 to 98775382 11 - TSS region transcription start site region 110602
Gm31862 11 98775457 to 98783728 8271 + lncRNA gene predicted gene, 31862
Tssr104788 11 98776018 to 98776021 3 + TSS region transcription start site region 104788
Cpgi3771 11 98783383 to 98783643 260 CpG island CpG island 3771
Cpgi3772 11 98789265 to 98789563 298 CpG island CpG island 3772