Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:94410541-94730551

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 chromosomal duplication duplication, Chr 11, Bradley 18
Del(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 cytogenetic marker deletion, Chr 11, Bradley 18
Cacna1g 11 94408391 to 94474198 65807 - protein coding gene calcium channel, voltage-dependent, T type, alpha 1G subunit
Tssr110172 11 94451835 to 94451863 28 - TSS region transcription start site region 110172
Tssr110173 11 94456460 to 94456469 9 - TSS region transcription start site region 110173
Cpgi3551 11 94472798 to 94475011 2213 CpG island CpG island 3551
Tssr110174 11 94473928 to 94473968 40 - TSS region transcription start site region 110174
Tssr110175 11 94474052 to 94474069 17 - TSS region transcription start site region 110175
Tssr110176 11 94474088 to 94474112 24 - TSS region transcription start site region 110176
Tssr110177 11 94474297 to 94474308 11 - TSS region transcription start site region 110177
Tssr110178 11 94474324 to 94474347 23 - TSS region transcription start site region 110178
Tssr110179 11 94474358 to 94474385 27 - TSS region transcription start site region 110179
Tssr110180 11 94474386 to 94474404 18 - TSS region transcription start site region 110180
Spata20 11 94478904 to 94485310 6406 - protein coding gene spermatogenesis associated 20
Cpgi3552 11 94483452 to 94483667 215 CpG island CpG island 3552
Tssr110181 11 94485275 to 94485281 6 - TSS region transcription start site region 110181
Tssr110182 11 94485290 to 94485327 37 - TSS region transcription start site region 110182
Tssr110183 11 94485331 to 94485356 25 - TSS region transcription start site region 110183
Cpgi3553 11 94485969 to 94486370 401 CpG island CpG island 3553
Tssr110184 11 94486211 to 94486221 10 - TSS region transcription start site region 110184
Tssr110185 11 94486224 to 94486234 10 - TSS region transcription start site region 110185
Tssr110186 11 94486242 to 94486264 22 - TSS region transcription start site region 110186
Epn3 11 94489599 to 94499974 10375 - protein coding gene epsin 3
Cpgi3554 11 94490871 to 94491760 889 CpG island CpG island 3554
Tssr110187 11 94491344 to 94491372 28 - TSS region transcription start site region 110187
Tssr110188 11 94498170 to 94498191 21 - TSS region transcription start site region 110188
Tssr110189 11 94498193 to 94498207 14 - TSS region transcription start site region 110189
Cpgi3555 11 94499756 to 94500113 357 CpG island CpG island 3555
Tssr110190 11 94499883 to 94499959 76 - TSS region transcription start site region 110190
Tssr110191 11 94499962 to 94500002 40 - TSS region transcription start site region 110191
Mycbpap 11 94501347 to 94521742 20395 - protein coding gene MYCBP associated protein
Gm35650 11 94507162 to 94518588 11426 + lncRNA gene predicted gene, 35650
Tssr110192 11 94507288 to 94507299 11 - TSS region transcription start site region 110192
Tssr110193 11 94507337 to 94507345 8 - TSS region transcription start site region 110193
Tssr104206 11 94507436 to 94507451 15 + TSS region transcription start site region 104206
Tssr104207 11 94507460 to 94507474 14 + TSS region transcription start site region 104207
Tssr104208 11 94507488 to 94507500 12 + TSS region transcription start site region 104208
Tssr110194 11 94508347 to 94508349 2 - TSS region transcription start site region 110194
Tssr110195 11 94509796 to 94509797 1 - TSS region transcription start site region 110195
Tssr110196 11 94509813 to 94509825 12 - TSS region transcription start site region 110196
Cpgi3556 11 94520992 to 94521752 760 CpG island CpG island 3556
Tssr110197 11 94521299 to 94521323 24 - TSS region transcription start site region 110197
Tssr110198 11 94521324 to 94521349 25 - TSS region transcription start site region 110198
Tssr110199 11 94521472 to 94521516 44 - TSS region transcription start site region 110199
Rsad1 11 94539798 to 94549255 9457 - protein coding gene radical S-adenosyl methionine domain containing 1
Heal25 11 94546357 to 94546496 139 QTL wound healing/regeneration 25
D11Mit213 11 94546357 to 94546496 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 213
Heal10 11 94546357 to 94546496 139 QTL wound healing/regeneration 10
Cpgi3557 11 94548401 to 94549421 1020 CpG island CpG island 3557
Tssr110200 11 94549165 to 94549222 57 - TSS region transcription start site region 110200
Acsf2 11 94557102 to 94601871 44769 - protein coding gene acyl-CoA synthetase family member 2
D11Dcr17 11 94563424 to 94563568 144 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 17
D11Mit288 11 94563438 to 94563565 127 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 288
Cpgi3558 11 94564511 to 94565519 1008 CpG island CpG island 3558
Tssr104209 11 94564869 to 94564886 17 + TSS region transcription start site region 104209
Tssr104210 11 94565039 to 94565056 17 + TSS region transcription start site region 104210
Chad 11 94565074 to 94569127 4053 + protein coding gene chondroadherin
Del(11Chad-Hoxb1)19Brd 11 94565074 to 96368256 1803182 complex/cluster/region deletion, Chr 11, Bradley 19
Tssr104211 11 94565415 to 94565443 28 + TSS region transcription start site region 104211
Tssr110201 11 94570541 to 94570551 10 - TSS region transcription start site region 110201
Cpgi3559 11 94601340 to 94602217 877 CpG island CpG island 3559
Tssr110202 11 94601796 to 94601822 26 - TSS region transcription start site region 110202
Tssr110203 11 94601825 to 94601851 26 - TSS region transcription start site region 110203
Tssr110204 11 94601862 to 94601873 11 - TSS region transcription start site region 110204
Tssr110205 11 94601883 to 94601895 12 - TSS region transcription start site region 110205
Tssr110206 11 94601965 to 94601983 18 - TSS region transcription start site region 110206
Gm11540 11 94607402 to 94609036 1634 + pseudogene predicted gene 11540
Cpgi3560 11 94629550 to 94630383 833 CpG island CpG island 3560
Tssr104212 11 94629741 to 94629834 93 + TSS region transcription start site region 104212
Lrrc59 11 94629824 to 94645216 15392 + protein coding gene leucine rich repeat containing 59
Tssr104213 11 94638843 to 94638865 22 + TSS region transcription start site region 104213
Tssr104214 11 94641310 to 94641328 18 + TSS region transcription start site region 104214
Tssr104215 11 94644132 to 94644166 34 + TSS region transcription start site region 104215
Tssr104216 11 94644370 to 94644386 16 + TSS region transcription start site region 104216
Tssr104217 11 94644395 to 94644410 15 + TSS region transcription start site region 104217
Tssr104218 11 94644645 to 94644669 24 + TSS region transcription start site region 104218
Tssr104219 11 94644887 to 94644950 63 + TSS region transcription start site region 104219
Eme1 11 94644998 to 94653785 8787 - protein coding gene essential meiotic structure-specific endonuclease 1
Tssr104220 11 94645270 to 94645272 2 + TSS region transcription start site region 104220
Cpgi3561 11 94653659 to 94654089 430 CpG island CpG island 3561
Tssr110207 11 94653687 to 94653707 20 - TSS region transcription start site region 110207
Tssr110208 11 94653714 to 94653761 47 - TSS region transcription start site region 110208
Mrpl27 11 94653767 to 94660089 6322 + protein coding gene mitochondrial ribosomal protein L27
Tssr110209 11 94653922 to 94653942 20 - TSS region transcription start site region 110209
Tssr104221 11 94654004 to 94654027 23 + TSS region transcription start site region 104221
Tssr104222 11 94654032 to 94654053 21 + TSS region transcription start site region 104222
Xylt2 11 94663851 to 94677515 13664 - protein coding gene xylosyltransferase II
Cpgi3562 11 94676500 to 94677889 1389 CpG island CpG island 3562
Tssr3645 11 94677357 to 94677379 22 - TSS region transcription start site region 3645
Tssr110210 11 94677404 to 94677496 92 - TSS region transcription start site region 110210
Gm11542 11 94677565 to 94687664 10099 + unclassified non-coding RNA gene predicted gene 11542
Tssr104223 11 94677578 to 94677632 54 + TSS region transcription start site region 104223
Tssr104224 11 94681810 to 94681815 5 + TSS region transcription start site region 104224
Tssr110211 11 94692544 to 94692576 32 - TSS region transcription start site region 110211
Gm11541 11 94694498 to 94704499 10001 - protein coding gene predicted gene 11541
Cpgi3563 11 94701422 to 94701651 229 CpG island CpG island 3563
Dbm2 11 118131898 to 94546357 -23585541 QTL diabetes modifier 2