Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:94336310-94946328

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dp(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 chromosomal duplication duplication, Chr 11, Bradley 18
Del(11Mpo-Chad)18Brd 11 87793784 to 94569127 6775343 cytogenetic marker deletion, Chr 11, Bradley 18
Ankrd40 11 94328001 to 94341841 13840 + protein coding gene ankyrin repeat domain 40
Tssr104201 11 94339844 to 94339855 11 + TSS region transcription start site region 104201
Abcc3 11 94343295 to 94392997 49702 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 3
Tssr110160 11 94346132 to 94346157 25 - TSS region transcription start site region 110160
Tssr110161 11 94351346 to 94351350 4 - TSS region transcription start site region 110161
Cpgi3549 11 94351810 to 94352215 405 CpG island CpG island 3549
Tssr110162 11 94352102 to 94352129 27 - TSS region transcription start site region 110162
Tssr110163 11 94352144 to 94352153 9 - TSS region transcription start site region 110163
Tssr104202 11 94352169 to 94352192 23 + TSS region transcription start site region 104202
Tssr104203 11 94352200 to 94352211 11 + TSS region transcription start site region 104203
Tssr110164 11 94358846 to 94358856 10 - TSS region transcription start site region 110164
Tssr110165 11 94358868 to 94358877 9 - TSS region transcription start site region 110165
Tssr110166 11 94360148 to 94360150 2 - TSS region transcription start site region 110166
Tssr104204 11 94363937 to 94363946 9 + TSS region transcription start site region 104204
Tssr104205 11 94363947 to 94363950 3 + TSS region transcription start site region 104205
Tssr110167 11 94365419 to 94365426 7 - TSS region transcription start site region 110167
Tssr110168 11 94365434 to 94365448 14 - TSS region transcription start site region 110168
Tssr110169 11 94371740 to 94371752 12 - TSS region transcription start site region 110169
Tssr110170 11 94375112 to 94375135 23 - TSS region transcription start site region 110170
Cpgi3550 11 94392660 to 94392957 297 CpG island CpG island 3550
Tssr110171 11 94392917 to 94392983 66 - TSS region transcription start site region 110171
Cacna1g 11 94408391 to 94474198 65807 - protein coding gene calcium channel, voltage-dependent, T type, alpha 1G subunit
Tssr110172 11 94451835 to 94451863 28 - TSS region transcription start site region 110172
Tssr110173 11 94456460 to 94456469 9 - TSS region transcription start site region 110173
Cpgi3551 11 94472798 to 94475011 2213 CpG island CpG island 3551
Tssr110174 11 94473928 to 94473968 40 - TSS region transcription start site region 110174
Tssr110175 11 94474052 to 94474069 17 - TSS region transcription start site region 110175
Tssr110176 11 94474088 to 94474112 24 - TSS region transcription start site region 110176
Tssr110177 11 94474297 to 94474308 11 - TSS region transcription start site region 110177
Tssr110178 11 94474324 to 94474347 23 - TSS region transcription start site region 110178
Tssr110179 11 94474358 to 94474385 27 - TSS region transcription start site region 110179
Tssr110180 11 94474386 to 94474404 18 - TSS region transcription start site region 110180
Spata20 11 94478904 to 94485310 6406 - protein coding gene spermatogenesis associated 20
Cpgi3552 11 94483452 to 94483667 215 CpG island CpG island 3552
Tssr110181 11 94485275 to 94485281 6 - TSS region transcription start site region 110181
Tssr110182 11 94485290 to 94485327 37 - TSS region transcription start site region 110182
Tssr110183 11 94485331 to 94485356 25 - TSS region transcription start site region 110183
Cpgi3553 11 94485969 to 94486370 401 CpG island CpG island 3553
Tssr110184 11 94486211 to 94486221 10 - TSS region transcription start site region 110184
Tssr110185 11 94486224 to 94486234 10 - TSS region transcription start site region 110185
Tssr110186 11 94486242 to 94486264 22 - TSS region transcription start site region 110186
Epn3 11 94489599 to 94499974 10375 - protein coding gene epsin 3
Cpgi3554 11 94490871 to 94491760 889 CpG island CpG island 3554
Tssr110187 11 94491344 to 94491372 28 - TSS region transcription start site region 110187
Tssr110188 11 94498170 to 94498191 21 - TSS region transcription start site region 110188
Tssr110189 11 94498193 to 94498207 14 - TSS region transcription start site region 110189
Cpgi3555 11 94499756 to 94500113 357 CpG island CpG island 3555
Tssr110190 11 94499883 to 94499959 76 - TSS region transcription start site region 110190
Tssr110191 11 94499962 to 94500002 40 - TSS region transcription start site region 110191
Mycbpap 11 94501347 to 94521742 20395 - protein coding gene MYCBP associated protein
Gm35650 11 94507162 to 94518588 11426 + lncRNA gene predicted gene, 35650
Tssr110192 11 94507288 to 94507299 11 - TSS region transcription start site region 110192
Tssr110193 11 94507337 to 94507345 8 - TSS region transcription start site region 110193
Tssr104206 11 94507436 to 94507451 15 + TSS region transcription start site region 104206
Tssr104207 11 94507460 to 94507474 14 + TSS region transcription start site region 104207
Tssr104208 11 94507488 to 94507500 12 + TSS region transcription start site region 104208
Tssr110194 11 94508347 to 94508349 2 - TSS region transcription start site region 110194
Tssr110195 11 94509796 to 94509797 1 - TSS region transcription start site region 110195
Tssr110196 11 94509813 to 94509825 12 - TSS region transcription start site region 110196
Cpgi3556 11 94520992 to 94521752 760 CpG island CpG island 3556
Tssr110197 11 94521299 to 94521323 24 - TSS region transcription start site region 110197
Tssr110198 11 94521324 to 94521349 25 - TSS region transcription start site region 110198
Tssr110199 11 94521472 to 94521516 44 - TSS region transcription start site region 110199
Rsad1 11 94539798 to 94549255 9457 - protein coding gene radical S-adenosyl methionine domain containing 1
D11Mit213 11 94546357 to 94546496 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 213
Heal10 11 94546357 to 94546496 139 QTL wound healing/regeneration 10
Heal25 11 94546357 to 94546496 139 QTL wound healing/regeneration 25
Cpgi3557 11 94548401 to 94549421 1020 CpG island CpG island 3557
Tssr110200 11 94549165 to 94549222 57 - TSS region transcription start site region 110200
Acsf2 11 94557102 to 94601871 44769 - protein coding gene acyl-CoA synthetase family member 2
D11Dcr17 11 94563424 to 94563568 144 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 17
D11Mit288 11 94563438 to 94563565 127 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 288
Cpgi3558 11 94564511 to 94565519 1008 CpG island CpG island 3558
Tssr104209 11 94564869 to 94564886 17 + TSS region transcription start site region 104209
Tssr104210 11 94565039 to 94565056 17 + TSS region transcription start site region 104210
Del(11Chad-Hoxb1)19Brd 11 94565074 to 96368256 1803182 complex/cluster/region deletion, Chr 11, Bradley 19
Chad 11 94565074 to 94569127 4053 + protein coding gene chondroadherin
Tssr104211 11 94565415 to 94565443 28 + TSS region transcription start site region 104211
Tssr110201 11 94570541 to 94570551 10 - TSS region transcription start site region 110201
Cpgi3559 11 94601340 to 94602217 877 CpG island CpG island 3559
Tssr110202 11 94601796 to 94601822 26 - TSS region transcription start site region 110202
Tssr110203 11 94601825 to 94601851 26 - TSS region transcription start site region 110203
Tssr110204 11 94601862 to 94601873 11 - TSS region transcription start site region 110204
Tssr110205 11 94601883 to 94601895 12 - TSS region transcription start site region 110205
Tssr110206 11 94601965 to 94601983 18 - TSS region transcription start site region 110206
Gm11540 11 94607402 to 94609036 1634 + pseudogene predicted gene 11540
Cpgi3560 11 94629550 to 94630383 833 CpG island CpG island 3560
Tssr104212 11 94629741 to 94629834 93 + TSS region transcription start site region 104212
Lrrc59 11 94629824 to 94645216 15392 + protein coding gene leucine rich repeat containing 59
Tssr104213 11 94638843 to 94638865 22 + TSS region transcription start site region 104213
Tssr104214 11 94641310 to 94641328 18 + TSS region transcription start site region 104214
Tssr104215 11 94644132 to 94644166 34 + TSS region transcription start site region 104215
Tssr104216 11 94644370 to 94644386 16 + TSS region transcription start site region 104216
Tssr104217 11 94644395 to 94644410 15 + TSS region transcription start site region 104217
Tssr104218 11 94644645 to 94644669 24 + TSS region transcription start site region 104218
Tssr104219 11 94644887 to 94644950 63 + TSS region transcription start site region 104219
Eme1 11 94644998 to 94653785 8787 - protein coding gene essential meiotic structure-specific endonuclease 1
Tssr104220 11 94645270 to 94645272 2 + TSS region transcription start site region 104220
Cpgi3561 11 94653659 to 94654089 430 CpG island CpG island 3561
Tssr110207 11 94653687 to 94653707 20 - TSS region transcription start site region 110207
Tssr110208 11 94653714 to 94653761 47 - TSS region transcription start site region 110208
Mrpl27 11 94653767 to 94660089 6322 + protein coding gene mitochondrial ribosomal protein L27
Tssr110209 11 94653922 to 94653942 20 - TSS region transcription start site region 110209
Tssr104221 11 94654004 to 94654027 23 + TSS region transcription start site region 104221
Tssr104222 11 94654032 to 94654053 21 + TSS region transcription start site region 104222
Xylt2 11 94663851 to 94677515 13664 - protein coding gene xylosyltransferase II
Cpgi3562 11 94676500 to 94677889 1389 CpG island CpG island 3562
Tssr3645 11 94677357 to 94677379 22 - TSS region transcription start site region 3645
Tssr110210 11 94677404 to 94677496 92 - TSS region transcription start site region 110210
Gm11542 11 94677565 to 94687664 10099 + unclassified non-coding RNA gene predicted gene 11542
Tssr104223 11 94677578 to 94677632 54 + TSS region transcription start site region 104223
Tssr104224 11 94681810 to 94681815 5 + TSS region transcription start site region 104224
Tssr110211 11 94692544 to 94692576 32 - TSS region transcription start site region 110211
Gm11541 11 94694498 to 94704499 10001 - protein coding gene predicted gene 11541
Cpgi3563 11 94701422 to 94701651 229 CpG island CpG island 3563
Cdc34b 11 94741837 to 94743014 1177 + protein coding gene cell division cycle 34B
Cpgi3564 11 94741837 to 94742681 844 CpG island CpG island 3564
Tssr104225 11 94742116 to 94742145 29 + TSS region transcription start site region 104225
Gm11545 11 94756976 to 94757763 787 - pseudogene predicted gene 11545
Tssr110212 11 94760911 to 94760917 6 - TSS region transcription start site region 110212
Tssr110213 11 94760935 to 94760959 24 - TSS region transcription start site region 110213
Tssr110214 11 94761179 to 94761183 4 - TSS region transcription start site region 110214
Tmem92 11 94777217 to 94782703 5486 - protein coding gene transmembrane protein 92
Tssr110215 11 94782700 to 94782705 5 - TSS region transcription start site region 110215
Gm11546 11 94797049 to 94797777 728 - pseudogene predicted gene 11546
AA623943 11 94812619 to 94813348 729 - pseudogene expressed sequence AA623943
Gm11543 11 94828186 to 94828930 744 - pseudogene predicted gene 11543
Tssr110216 11 94831999 to 94832004 5 - TSS region transcription start site region 110216
Gm11544 11 94845358 to 94846092 734 - pseudogene predicted gene 11544
A430060F13Rik 11 94861018 to 94861759 741 - pseudogene RIKEN cDNA A430060F13 gene
Cpgi3565 11 94872895 to 94873280 385 CpG island CpG island 3565
D11Mit289 11 94880152 to 94880273 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 289
D11Dcr18 11 94880152 to 94880279 127 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 18
Moe1 11 94880152 to 94880273 121 QTL modifier of epilepsy 1
Gm22456 11 94919709 to 94919833 124 + snRNA gene predicted gene, 22456
Gm46293 11 94928561 to 94934616 6055 - lncRNA gene predicted gene, 46293
Cpgi3566 11 94936070 to 94936346 276 CpG island CpG island 3566
Col1a1 11 94936224 to 94953042 16818 + protein coding gene collagen, type I, alpha 1
Tssr104226 11 94936246 to 94936260 14 + TSS region transcription start site region 104226
Tssr104227 11 94937582 to 94937603 21 + TSS region transcription start site region 104227
Tssr104228 11 94937903 to 94937946 43 + TSS region transcription start site region 104228
Tssr104229 11 94937952 to 94938055 103 + TSS region transcription start site region 104229
Cpgi3567 11 94937960 to 94938146 186 CpG island CpG island 3567
Tssr110217 11 94937977 to 94937988 11 - TSS region transcription start site region 110217
Tssr110218 11 94938030 to 94938093 63 - TSS region transcription start site region 110218
Tssr104230 11 94938064 to 94938078 14 + TSS region transcription start site region 104230
Tssr110219 11 94938249 to 94938260 11 - TSS region transcription start site region 110219
Tssr104231 11 94938499 to 94938538 39 + TSS region transcription start site region 104231
Tssr104232 11 94938565 to 94938587 22 + TSS region transcription start site region 104232
Tssr3646 11 94939102 to 94939127 25 + TSS region transcription start site region 3646
Tssr104233 11 94939383 to 94939430 47 + TSS region transcription start site region 104233
Tssr104234 11 94939692 to 94939718 26 + TSS region transcription start site region 104234
Tssr104235 11 94939900 to 94939928 28 + TSS region transcription start site region 104235
Tssr104236 11 94942005 to 94942047 42 + TSS region transcription start site region 104236
Tssr104237 11 94942379 to 94942410 31 + TSS region transcription start site region 104237
Tssr104238 11 94942791 to 94942822 31 + TSS region transcription start site region 104238
Tssr110220 11 94942836 to 94942877 41 - TSS region transcription start site region 110220
Tssr104239 11 94943580 to 94943614 34 + TSS region transcription start site region 104239
Tssr104240 11 94943720 to 94943736 16 + TSS region transcription start site region 104240
Tssr104241 11 94943739 to 94943777 38 + TSS region transcription start site region 104241
Tssr104242 11 94944351 to 94944385 34 + TSS region transcription start site region 104242
Tssr110221 11 94944625 to 94944641 16 - TSS region transcription start site region 110221
Tssr104243 11 94944746 to 94944782 36 + TSS region transcription start site region 104243
Tssr104244 11 94944905 to 94944936 31 + TSS region transcription start site region 104244
Tssr104245 11 94945362 to 94945387 25 + TSS region transcription start site region 104245
Tssr104246 11 94945559 to 94945579 20 + TSS region transcription start site region 104246
Tssr104247 11 94945803 to 94945832 29 + TSS region transcription start site region 104247
Tssr104248 11 94946309 to 94946317 8 + TSS region transcription start site region 104248
Dbm2 11 118131898 to 94546357 -23585541 QTL diabetes modifier 2