Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:90585315-92567558

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stxbp4 11 90476492 to 90638084 161592 - protein coding gene syntaxin binding protein 4
Tssr104122 11 90586547 to 90586558 11 + TSS region transcription start site region 104122
Cpgi3535 11 90637662 to 90638874 1212 CpG island CpG island 3535
Tssr110097 11 90638067 to 90638100 33 - TSS region transcription start site region 110097
Tssr104123 11 90638127 to 90638207 80 + TSS region transcription start site region 104123
Cox11 11 90638173 to 90644931 6758 + protein coding gene cytochrome c oxidase assembly protein 11, copper chaperone
Tssr104124 11 90638212 to 90638223 11 + TSS region transcription start site region 104124
Tssr104125 11 90638417 to 90638445 28 + TSS region transcription start site region 104125
Tssr104126 11 90639601 to 90639602 1 + TSS region transcription start site region 104126
Tom1l1 11 90645690 to 90687662 41972 - protein coding gene target of myb1-like 1 (chicken)
Tssr110098 11 90663803 to 90663807 4 - TSS region transcription start site region 110098
Tssr110099 11 90663927 to 90663934 7 - TSS region transcription start site region 110099
Tssr110100 11 90673694 to 90673710 16 - TSS region transcription start site region 110100
Tssr104127 11 90675967 to 90675978 11 + TSS region transcription start site region 104127
Tssr104128 11 90676003 to 90676015 12 + TSS region transcription start site region 104128
Tssr104129 11 90676024 to 90676044 20 + TSS region transcription start site region 104129
Cpgi3536 11 90687257 to 90688017 760 CpG island CpG island 3536
Tssr110101 11 90687572 to 90687606 34 - TSS region transcription start site region 110101
Gm34938 11 90732749 to 90734535 1786 + lncRNA gene predicted gene, 34938
Gm22762 11 90782413 to 90782549 136 - snoRNA gene predicted gene, 22762
Tssr104130 11 90804682 to 90804699 17 + TSS region transcription start site region 104130
4930405D11Rik 11 90804692 to 90895149 90457 + lincRNA gene RIKEN cDNA 4930405D11 gene
Gm11516 11 90859767 to 90861348 1581 - pseudogene predicted gene 11516
Tssr104131 11 90883321 to 90883325 4 + TSS region transcription start site region 104131
Gm46292 11 90969096 to 90973045 3949 - pseudogene predicted gene, 46292
Gm38950 11 91560593 to 91561807 1214 - lncRNA gene predicted gene, 38950
Kif2b 11 91575315 to 91577558 2243 - protein coding gene kinesin family member 2B
Cpgi3537 11 91576638 to 91576977 339 CpG island CpG island 3537
Tssr3639 11 91577503 to 91577512 9 - TSS region transcription start site region 3639
Tssr110102 11 91577513 to 91577574 61 - TSS region transcription start site region 110102
Tssr3640 11 91577586 to 91577590 4 - TSS region transcription start site region 3640
Gm11498 11 91830442 to 91831390 948 - pseudogene predicted gene 11498
D11Mit287 11 91994421 to 91994527 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 287
Gm22702 11 92024345 to 92024413 68 - miRNA gene predicted gene, 22702
Tssr110103 11 92047406 to 92047414 8 - TSS region transcription start site region 110103