Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:89098207-91678237

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scc6 11 6930277 to 89128908 82198631 QTL colon tumor susceptibility 6
Mastr 11 45817754 to 89927907 44110153 QTL modifier of astrocytoma
Gm38759 11 89121390 to 89124467 3077 + lncRNA gene predicted gene, 38759
Gm11497 11 89124456 to 89126706 2250 - lincRNA gene predicted gene 11497
Sbmd4 11 89128823 to 89128908 85 QTL spinal bone mineral density 4
D11Mit284 11 89128823 to 89128908 85 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 284
Gm24734 11 89136505 to 89136766 261 - unclassified non-coding RNA gene predicted gene, 24734
Cpgi3526 11 89298109 to 89298830 721 CpG island CpG island 3526
Cpgi3527 11 89299265 to 89299630 365 CpG island CpG island 3527
Nog 11 89300638 to 89302332 1694 - protein coding gene noggin
Cpgi3528 11 89301282 to 89303597 2315 CpG island CpG island 3528
Tssr110068 11 89302545 to 89302567 22 - TSS region transcription start site region 110068
Gm2018 11 89302723 to 89309428 6705 + lincRNA gene predicted gene 2018
Gm42088 11 89372249 to 89384963 12714 + lncRNA gene predicted gene, 42088
Ankfn1 11 89386933 to 89733723 346790 - protein coding gene ankyrin-repeat and fibronectin type III domain containing 1
Cpgi3529 11 89391928 to 89392159 231 CpG island CpG island 3529
Tssr110069 11 89403510 to 89403519 9 - TSS region transcription start site region 110069
Tssr110070 11 89403523 to 89403539 16 - TSS region transcription start site region 110070
Tssr110071 11 89696850 to 89696873 23 - TSS region transcription start site region 110071
Gm46291 11 89697060 to 89710167 13107 + lncRNA gene predicted gene, 46291
Tssr104090 11 89715355 to 89715363 8 + TSS region transcription start site region 104090
Tssr110072 11 89733652 to 89733671 19 - TSS region transcription start site region 110072
Tssr110073 11 89733680 to 89733708 28 - TSS region transcription start site region 110073
Tssr110074 11 89733726 to 89733736 10 - TSS region transcription start site region 110074
Lfibq23 11 89751423 to 90536535 785112 QTL liver fibrosis QTL 23
Tssr110075 11 89777677 to 89777697 20 - TSS region transcription start site region 110075
Tssr110076 11 89818649 to 89818660 11 - TSS region transcription start site region 110076
Tmevd5 11 89835299 to 89835463 164 QTL Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5
D11Mit179 11 89835299 to 89835463 164 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 179
Tssr110077 11 89841266 to 89841279 13 - TSS region transcription start site region 110077
Tssr3638 11 89841296 to 89841310 14 - TSS region transcription start site region 3638
Gm34677 11 89860320 to 89884746 24426 - lncRNA gene predicted gene, 34677
D11Mit327 11 89867092 to 89867197 105 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 327
D11Ertd729e 11 89924236 to 89924437 201 DNA segment DNA segment, Chr 11, ERATO Doi 729, expressed
Pstc2 11 89927789 to 89927907 118 QTL periosteal circumference 2
D11Mit285 11 89927789 to 89927907 118 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 285
Adip19 11 89927789 to 89927907 118 QTL adiposity 19
Pctp 11 89982665 to 90002894 20229 - protein coding gene phosphatidylcholine transfer protein
Gm10276 11 89999839 to 90001674 1835 unclassified gene predicted gene 10276
Cpgi3530 11 90002751 to 90003010 259 CpG island CpG island 3530
Tssr110078 11 90002846 to 90002876 30 - TSS region transcription start site region 110078
Tssr110079 11 90002881 to 90002898 17 - TSS region transcription start site region 110079
Tssr104091 11 90029655 to 90029664 9 + TSS region transcription start site region 104091
Tssr104092 11 90030295 to 90030359 64 + TSS region transcription start site region 104092
Tmem100 11 90030348 to 90036508 6160 + protein coding gene transmembrane protein 100
Tssr104093 11 90030664 to 90030684 20 + TSS region transcription start site region 104093
Tssr104094 11 90030690 to 90030708 18 + TSS region transcription start site region 104094
Tssr104095 11 90030710 to 90030737 27 + TSS region transcription start site region 104095
Tssr104096 11 90032995 to 90033002 7 + TSS region transcription start site region 104096
Tssr104097 11 90033016 to 90033044 28 + TSS region transcription start site region 104097
Tssr104098 11 90033055 to 90033072 17 + TSS region transcription start site region 104098
Tssr104099 11 90033086 to 90033113 27 + TSS region transcription start site region 104099
Tssr104100 11 90033488 to 90033497 9 + TSS region transcription start site region 104100
Tssr104101 11 90033521 to 90033576 55 + TSS region transcription start site region 104101
Tssr104102 11 90033582 to 90033600 18 + TSS region transcription start site region 104102
Tssr104103 11 90033632 to 90033651 19 + TSS region transcription start site region 104103
Tssr104104 11 90034749 to 90034761 12 + TSS region transcription start site region 104104
Tssr104105 11 90034778 to 90034792 14 + TSS region transcription start site region 104105
Tssr104106 11 90035928 to 90035939 11 + TSS region transcription start site region 104106
Tssr104107 11 90035965 to 90035976 11 + TSS region transcription start site region 104107
Gm34726 11 90043364 to 90130395 87031 - lncRNA gene predicted gene, 34726
Tssr110080 11 90121810 to 90121815 5 - TSS region transcription start site region 110080
Tssr110081 11 90130235 to 90130258 23 - TSS region transcription start site region 110081
Tssr110082 11 90130266 to 90130277 11 - TSS region transcription start site region 110082
Gm11494 11 90134842 to 90143624 8782 - lincRNA gene predicted gene 11494
n-R5s72 11 90185009 to 90185127 118 - rRNA gene nuclear encoded rRNA 5S 72
Tssr104108 11 90187658 to 90187690 32 + TSS region transcription start site region 104108
Gm45716 11 90187683 to 90251255 63572 + protein coding gene predicted gene 45716
Tssr104109 11 90187701 to 90187707 6 + TSS region transcription start site region 104109
Gm45883 11 90188108 to 90267581 79473 + unclassified non-coding RNA gene predicted gene 45883
Gm42089 11 90195067 to 90225568 30501 - lncRNA gene predicted gene, 42089
Cpgi3531 11 90249027 to 90250120 1093 CpG island CpG island 3531
Tssr104110 11 90249426 to 90249448 22 + TSS region transcription start site region 104110
Mmd 11 90249456 to 90278589 29133 + protein coding gene monocyte to macrophage differentiation-associated
Tssr104111 11 90249469 to 90249482 13 + TSS region transcription start site region 104111
Tssr104112 11 90249487 to 90249503 16 + TSS region transcription start site region 104112
Tssr104113 11 90249513 to 90249532 19 + TSS region transcription start site region 104113
Tssr104114 11 90249565 to 90249574 9 + TSS region transcription start site region 104114
Tssr104115 11 90249580 to 90249589 9 + TSS region transcription start site region 104115
D11Mit286 11 90252959 to 90253082 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 286
D11Dcr16 11 90252981 to 90253081 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 16
Tssr104116 11 90255140 to 90255159 19 + TSS region transcription start site region 104116
Tssr104117 11 90257361 to 90257378 17 + TSS region transcription start site region 104117
Tssr104118 11 90257395 to 90257407 12 + TSS region transcription start site region 104118
Tssr104119 11 90259403 to 90259435 32 + TSS region transcription start site region 104119
D11Mit357 11 90263212 to 90263360 148 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 357
Tssr104120 11 90276929 to 90276969 40 + TSS region transcription start site region 104120
Hlf 11 90336536 to 90390895 54359 - protein coding gene hepatic leukemia factor
2900006B11Rik 11 90356561 to 90357829 1268 unclassified gene RIKEN cDNA 2900006B11 gene
Tssr110083 11 90382723 to 90382731 8 - TSS region transcription start site region 110083
Cpgi3532 11 90387621 to 90388022 401 CpG island CpG island 3532
Tssr110084 11 90388207 to 90388237 30 - TSS region transcription start site region 110084
Tssr110085 11 90388522 to 90388535 13 - TSS region transcription start site region 110085
Tssr110086 11 90389580 to 90389602 22 - TSS region transcription start site region 110086
Cpgi3533 11 90389581 to 90391171 1590 CpG island CpG island 3533
Tssr110087 11 90389630 to 90389668 38 - TSS region transcription start site region 110087
Tssr110088 11 90389685 to 90389699 14 - TSS region transcription start site region 110088
Tssr110089 11 90390538 to 90390541 3 - TSS region transcription start site region 110089
Tssr110090 11 90390646 to 90390658 12 - TSS region transcription start site region 110090
Tssr110091 11 90390757 to 90390779 22 - TSS region transcription start site region 110091
Tssr110092 11 90390794 to 90390820 26 - TSS region transcription start site region 110092
Tssr110093 11 90390909 to 90390926 17 - TSS region transcription start site region 110093
Cpgi3534 11 90417791 to 90418384 593 CpG island CpG island 3534
Gm34850 11 90463383 to 90472880 9497 - lncRNA gene predicted gene, 34850
Stxbp4 11 90476492 to 90638084 161592 - protein coding gene syntaxin binding protein 4
Gm11511 11 90516777 to 90517316 539 - pseudogene predicted gene 11511
Gm11512 11 90538484 to 90539146 662 - pseudogene predicted gene 11512
Tssr104121 11 90548839 to 90548872 33 + TSS region transcription start site region 104121
Tssr110094 11 90549427 to 90549436 9 - TSS region transcription start site region 110094
Tssr110095 11 90549438 to 90549446 8 - TSS region transcription start site region 110095
Tssr110096 11 90554018 to 90554027 9 - TSS region transcription start site region 110096
Tssr104122 11 90586547 to 90586558 11 + TSS region transcription start site region 104122
Cpgi3535 11 90637662 to 90638874 1212 CpG island CpG island 3535
Tssr110097 11 90638067 to 90638100 33 - TSS region transcription start site region 110097
Tssr104123 11 90638127 to 90638207 80 + TSS region transcription start site region 104123
Cox11 11 90638173 to 90644931 6758 + protein coding gene cytochrome c oxidase assembly protein 11, copper chaperone
Tssr104124 11 90638212 to 90638223 11 + TSS region transcription start site region 104124
Tssr104125 11 90638417 to 90638445 28 + TSS region transcription start site region 104125
Tssr104126 11 90639601 to 90639602 1 + TSS region transcription start site region 104126
Tom1l1 11 90645690 to 90687662 41972 - protein coding gene target of myb1-like 1 (chicken)
Tssr110098 11 90663803 to 90663807 4 - TSS region transcription start site region 110098
Tssr110099 11 90663927 to 90663934 7 - TSS region transcription start site region 110099
Tssr110100 11 90673694 to 90673710 16 - TSS region transcription start site region 110100
Tssr104127 11 90675967 to 90675978 11 + TSS region transcription start site region 104127
Tssr104128 11 90676003 to 90676015 12 + TSS region transcription start site region 104128
Tssr104129 11 90676024 to 90676044 20 + TSS region transcription start site region 104129
Cpgi3536 11 90687257 to 90688017 760 CpG island CpG island 3536
Tssr110101 11 90687572 to 90687606 34 - TSS region transcription start site region 110101
Gm34938 11 90732749 to 90734535 1786 + lncRNA gene predicted gene, 34938
Gm22762 11 90782413 to 90782549 136 - snoRNA gene predicted gene, 22762
Tssr104130 11 90804682 to 90804699 17 + TSS region transcription start site region 104130
4930405D11Rik 11 90804692 to 90895149 90457 + lincRNA gene RIKEN cDNA 4930405D11 gene
Gm11516 11 90859767 to 90861348 1581 - pseudogene predicted gene 11516
Tssr104131 11 90883321 to 90883325 4 + TSS region transcription start site region 104131
Gm46292 11 90969096 to 90973045 3949 - pseudogene predicted gene, 46292
Gm38950 11 91560593 to 91561807 1214 - lncRNA gene predicted gene, 38950
Kif2b 11 91575315 to 91577558 2243 - protein coding gene kinesin family member 2B
Cpgi3537 11 91576638 to 91576977 339 CpG island CpG island 3537
Tssr3639 11 91577503 to 91577512 9 - TSS region transcription start site region 3639
Tssr110102 11 91577513 to 91577574 61 - TSS region transcription start site region 110102
Tssr3640 11 91577586 to 91577590 4 - TSS region transcription start site region 3640