Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:89006933-90113723

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scc6 11 6930277 to 89128908 82198631 QTL colon tumor susceptibility 6
Mastr 11 45817754 to 89927907 44110153 QTL modifier of astrocytoma
nmf65 11 69039071 to 89076112 20037041 heritable phenotypic marker neuroscience mutagenesis facility, 65
Trim25 11 88999398 to 89020293 20895 + protein coding gene tripartite motif-containing 25
Tssr104065 11 89008116 to 89008129 13 + TSS region transcription start site region 104065
Tssr104066 11 89010893 to 89010909 16 + TSS region transcription start site region 104066
Tssr104067 11 89010969 to 89010977 8 + TSS region transcription start site region 104067
Tssr104068 11 89015528 to 89015556 28 + TSS region transcription start site region 104068
Tssr104069 11 89016877 to 89016893 16 + TSS region transcription start site region 104069
Tssr104070 11 89016933 to 89016948 15 + TSS region transcription start site region 104070
Tssr104071 11 89019479 to 89019501 22 + TSS region transcription start site region 104071
Tssr104072 11 89019608 to 89019620 12 + TSS region transcription start site region 104072
Tssr104073 11 89024511 to 89024525 14 + TSS region transcription start site region 104073
Tssr104074 11 89029392 to 89029431 39 + TSS region transcription start site region 104074
Dgke 11 89035185 to 89060757 25572 - protein coding gene diacylglycerol kinase, epsilon
Tssr110062 11 89048398 to 89048404 6 - TSS region transcription start site region 110062
Cpgi3525 11 89059909 to 89061001 1092 CpG island CpG island 3525
Tssr110063 11 89060528 to 89060588 60 - TSS region transcription start site region 110063
Tssr104075 11 89060625 to 89060639 14 + TSS region transcription start site region 104075
Tssr104076 11 89060667 to 89060672 5 + TSS region transcription start site region 104076
Tssr110064 11 89060697 to 89060799 102 - TSS region transcription start site region 110064
Tssr104077 11 89060732 to 89060754 22 + TSS region transcription start site region 104077
Dgkeos 11 89064729 to 89069098 4369 + antisense lncRNA gene diacylglycerol kinase, epsilon, opposite strand
Tssr104078 11 89065814 to 89065826 12 + TSS region transcription start site region 104078
Tssr104079 11 89065827 to 89065847 20 + TSS region transcription start site region 104079
Tssr104080 11 89065874 to 89065886 12 + TSS region transcription start site region 104080
Tssr104081 11 89066004 to 89066021 17 + TSS region transcription start site region 104081
Tssr104082 11 89066031 to 89066043 12 + TSS region transcription start site region 104082
Tssr104083 11 89066315 to 89066355 40 + TSS region transcription start site region 104083
Tssr104084 11 89066361 to 89066406 45 + TSS region transcription start site region 104084
Tssr104085 11 89066412 to 89066428 16 + TSS region transcription start site region 104085
Tssr104086 11 89066433 to 89066451 18 + TSS region transcription start site region 104086
Gm525 11 89073841 to 89093040 19199 + protein coding gene predicted gene 525
Tssr104087 11 89073921 to 89073934 13 + TSS region transcription start site region 104087
D11Mit41 11 89075978 to 89076112 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 41
Tssr110065 11 89077695 to 89077702 7 - TSS region transcription start site region 110065
Tssr3637 11 89078207 to 89078211 4 + TSS region transcription start site region 3637
Gm22534 11 89087048 to 89087151 103 - snRNA gene predicted gene, 22534
Tssr104088 11 89092282 to 89092293 11 + TSS region transcription start site region 104088
Tssr104089 11 89092299 to 89092316 17 + TSS region transcription start site region 104089
Tssr110066 11 89092921 to 89092926 5 - TSS region transcription start site region 110066
Tssr110067 11 89095269 to 89095284 15 - TSS region transcription start site region 110067
Gm38759 11 89121390 to 89124467 3077 + lncRNA gene predicted gene, 38759
Gm11497 11 89124456 to 89126706 2250 - lincRNA gene predicted gene 11497
Sbmd4 11 89128823 to 89128908 85 QTL spinal bone mineral density 4
D11Mit284 11 89128823 to 89128908 85 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 284
Gm24734 11 89136505 to 89136766 261 - unclassified non-coding RNA gene predicted gene, 24734
Cpgi3526 11 89298109 to 89298830 721 CpG island CpG island 3526
Cpgi3527 11 89299265 to 89299630 365 CpG island CpG island 3527
Nog 11 89300638 to 89302332 1694 - protein coding gene noggin
Cpgi3528 11 89301282 to 89303597 2315 CpG island CpG island 3528
Tssr110068 11 89302545 to 89302567 22 - TSS region transcription start site region 110068
Gm2018 11 89302723 to 89309428 6705 + lincRNA gene predicted gene 2018
Gm42088 11 89372249 to 89384963 12714 + lncRNA gene predicted gene, 42088
Ankfn1 11 89386933 to 89733723 346790 - protein coding gene ankyrin-repeat and fibronectin type III domain containing 1
Cpgi3529 11 89391928 to 89392159 231 CpG island CpG island 3529
Tssr110069 11 89403510 to 89403519 9 - TSS region transcription start site region 110069
Tssr110070 11 89403523 to 89403539 16 - TSS region transcription start site region 110070
Tssr110071 11 89696850 to 89696873 23 - TSS region transcription start site region 110071
Gm46291 11 89697060 to 89710167 13107 + lncRNA gene predicted gene, 46291
Tssr104090 11 89715355 to 89715363 8 + TSS region transcription start site region 104090
Tssr110072 11 89733652 to 89733671 19 - TSS region transcription start site region 110072
Tssr110073 11 89733680 to 89733708 28 - TSS region transcription start site region 110073
Tssr110074 11 89733726 to 89733736 10 - TSS region transcription start site region 110074
Lfibq23 11 89751423 to 90536535 785112 QTL liver fibrosis QTL 23
Tssr110075 11 89777677 to 89777697 20 - TSS region transcription start site region 110075
Tssr110076 11 89818649 to 89818660 11 - TSS region transcription start site region 110076
D11Mit179 11 89835299 to 89835463 164 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 179
Tmevd5 11 89835299 to 89835463 164 QTL Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5
Tssr110077 11 89841266 to 89841279 13 - TSS region transcription start site region 110077
Tssr3638 11 89841296 to 89841310 14 - TSS region transcription start site region 3638
Gm34677 11 89860320 to 89884746 24426 - lncRNA gene predicted gene, 34677
D11Mit327 11 89867092 to 89867197 105 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 327
D11Ertd729e 11 89924236 to 89924437 201 DNA segment DNA segment, Chr 11, ERATO Doi 729, expressed
D11Mit285 11 89927789 to 89927907 118 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 285
Pstc2 11 89927789 to 89927907 118 QTL periosteal circumference 2
Adip19 11 89927789 to 89927907 118 QTL adiposity 19
Pctp 11 89982665 to 90002894 20229 - protein coding gene phosphatidylcholine transfer protein
Gm10276 11 89999839 to 90001674 1835 unclassified gene predicted gene 10276
Cpgi3530 11 90002751 to 90003010 259 CpG island CpG island 3530
Tssr110078 11 90002846 to 90002876 30 - TSS region transcription start site region 110078
Tssr110079 11 90002881 to 90002898 17 - TSS region transcription start site region 110079
Tssr104091 11 90029655 to 90029664 9 + TSS region transcription start site region 104091
Tssr104092 11 90030295 to 90030359 64 + TSS region transcription start site region 104092
Tmem100 11 90030348 to 90036508 6160 + protein coding gene transmembrane protein 100
Tssr104093 11 90030664 to 90030684 20 + TSS region transcription start site region 104093
Tssr104094 11 90030690 to 90030708 18 + TSS region transcription start site region 104094
Tssr104095 11 90030710 to 90030737 27 + TSS region transcription start site region 104095
Tssr104096 11 90032995 to 90033002 7 + TSS region transcription start site region 104096
Tssr104097 11 90033016 to 90033044 28 + TSS region transcription start site region 104097
Tssr104098 11 90033055 to 90033072 17 + TSS region transcription start site region 104098
Tssr104099 11 90033086 to 90033113 27 + TSS region transcription start site region 104099
Tssr104100 11 90033488 to 90033497 9 + TSS region transcription start site region 104100
Tssr104101 11 90033521 to 90033576 55 + TSS region transcription start site region 104101
Tssr104102 11 90033582 to 90033600 18 + TSS region transcription start site region 104102
Tssr104103 11 90033632 to 90033651 19 + TSS region transcription start site region 104103
Tssr104104 11 90034749 to 90034761 12 + TSS region transcription start site region 104104
Tssr104105 11 90034778 to 90034792 14 + TSS region transcription start site region 104105
Tssr104106 11 90035928 to 90035939 11 + TSS region transcription start site region 104106
Tssr104107 11 90035965 to 90035976 11 + TSS region transcription start site region 104107
Gm34726 11 90043364 to 90130395 87031 - lncRNA gene predicted gene, 34726