Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:88048939-88148950

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Srsf1 11 88047373 to 88053755 6382 + protein coding gene serine/arginine-rich splicing factor 1
Tssr110001 11 88049067 to 88049080 13 - TSS region transcription start site region 110001
Tssr104016 11 88049407 to 88049421 14 + TSS region transcription start site region 104016
Tssr104017 11 88049541 to 88049604 63 + TSS region transcription start site region 104017
Tssr104018 11 88051156 to 88051169 13 + TSS region transcription start site region 104018
Tssr104019 11 88055861 to 88055864 3 + TSS region transcription start site region 104019
Gm15892 11 88059066 to 88067476 8410 + lincRNA gene predicted gene 15892
Cpgi3507 11 88067621 to 88069362 1741 CpG island CpG island 3507
Tssr104020 11 88067674 to 88067703 29 + TSS region transcription start site region 104020
Tssr104021 11 88068067 to 88068131 64 + TSS region transcription start site region 104021
Tssr104022 11 88068242 to 88068289 47 + TSS region transcription start site region 104022
Vezf1 11 88068279 to 88084729 16450 + protein coding gene vascular endothelial zinc finger 1
Tssr104023 11 88068301 to 88068315 14 + TSS region transcription start site region 104023
Tssr104024 11 88068316 to 88068332 16 + TSS region transcription start site region 104024
Tssr104025 11 88068379 to 88068385 6 + TSS region transcription start site region 104025
Tssr104026 11 88068540 to 88068571 31 + TSS region transcription start site region 104026
D11Mit196.1 11 88076810 to 88076952 142 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 196.1
2210416O15Rik 11 88098058 to 88100107 2049 + lncRNA gene RIKEN cDNA 2210416O15 gene
Cpgi3508 11 88098658 to 88100031 1373 CpG island CpG island 3508
Tssr104027 11 88098939 to 88098950 11 + TSS region transcription start site region 104027
Cuedc1 11 88099146 to 88194140 94994 + protein coding gene CUE domain containing 1
Tssr104028 11 88099156 to 88099181 25 + TSS region transcription start site region 104028
Tssr104029 11 88099203 to 88099254 51 + TSS region transcription start site region 104029
Tssr104030 11 88099284 to 88099311 27 + TSS region transcription start site region 104030
Tssr104031 11 88105372 to 88105376 4 + TSS region transcription start site region 104031
Tssr110002 11 88118879 to 88118909 30 - TSS region transcription start site region 110002
Cpgi3509 11 88139279 to 88139466 187 CpG island CpG island 3509
Tssr104032 11 88142541 to 88142568 27 + TSS region transcription start site region 104032