Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:84257817-85657835

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq10 11 36000000 to 85000000 49000000 QTL body mass index QTL 10
Skts-fp2 11 58828440 to 85175703 26347263 QTL skin tumor susceptibility in FVB and PWK 2
Alcp2 11 72318970 to 84840636 12521666 QTL alcohol preference locus 2, female specific
Acaca 11 84129677 to 84401651 271974 + protein coding gene acetyl-Coenzyme A carboxylase alpha
Aatf 11 84422855 to 84513522 90667 - protein coding gene apoptosis antagonizing transcription factor
Tssr109756 11 84442644 to 84442668 24 - TSS region transcription start site region 109756
Tssr109757 11 84442680 to 84442703 23 - TSS region transcription start site region 109757
Tssr109758 11 84443061 to 84443071 10 - TSS region transcription start site region 109758
Tssr109759 11 84491520 to 84491526 6 - TSS region transcription start site region 109759
Tssr109760 11 84491529 to 84491534 5 - TSS region transcription start site region 109760
Tssr109761 11 84491567 to 84491578 11 - TSS region transcription start site region 109761
Cpgi3431 11 84513086 to 84514030 944 CpG island CpG island 3431
Tssr109762 11 84513391 to 84513402 11 - TSS region transcription start site region 109762
Tssr109763 11 84513485 to 84513553 68 - TSS region transcription start site region 109763
Tssr109764 11 84519047 to 84519059 12 - TSS region transcription start site region 109764
Tssr109765 11 84519273 to 84519286 13 - TSS region transcription start site region 109765
Lhx1 11 84519379 to 84525534 6155 - protein coding gene LIM homeobox protein 1
Cpgi3432 11 84519515 to 84520544 1029 CpG island CpG island 3432
Cpgi3433 11 84522046 to 84522289 243 CpG island CpG island 3433
Cpgi3434 11 84522615 to 84523041 426 CpG island CpG island 3434
Cpgi3435 11 84523984 to 84526601 2617 CpG island CpG island 3435
Tssr109766 11 84524855 to 84524870 15 - TSS region transcription start site region 109766
Tssr109767 11 84525514 to 84525542 28 - TSS region transcription start site region 109767
Tssr103805 11 84525647 to 84525658 11 + TSS region transcription start site region 103805
Lhx1os 11 84525660 to 84535831 10171 + lincRNA gene LIM homeobox 1, opposite strand
Tssr103806 11 84525672 to 84525689 17 + TSS region transcription start site region 103806
Cpgi3436 11 84529236 to 84529563 327 CpG island CpG island 3436
Cpgi3437 11 84570481 to 84570640 159 CpG island CpG island 3437
D11Mit281 11 84624549 to 84624670 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 281
Cpgi3438 11 84642205 to 84643207 1002 CpG island CpG island 3438
D11Mit355 11 84692330 to 84692454 124 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 355
1700109G15Rik 11 84716976 to 84720432 3456 - lincRNA gene RIKEN cDNA 1700109G15 gene
Cpgi3439 11 84724122 to 84724430 308 CpG island CpG island 3439
Cpgi3440 11 84760906 to 84761079 173 CpG island CpG island 3440
Gm11431 11 84763855 to 84777829 13974 - lincRNA gene predicted gene 11431
Cpgi3441 11 84764584 to 84764855 271 CpG island CpG island 3441
Cpgi3442 11 84798108 to 84798308 200 CpG island CpG island 3442
Mrm1 11 84813061 to 84819515 6454 - protein coding gene mitochondrial rRNA methyltransferase 1
Cpgi3443 11 84818417 to 84819810 1393 CpG island CpG island 3443
Tssr103807 11 84818832 to 84818870 38 + TSS region transcription start site region 103807
Tssr109768 11 84819390 to 84819415 25 - TSS region transcription start site region 109768
Tssr109769 11 84819450 to 84819471 21 - TSS region transcription start site region 109769
Dhrs11 11 84820856 to 84828994 8138 - protein coding gene dehydrogenase/reductase (SDR family) member 11
Tssr109770 11 84823540 to 84823553 13 - TSS region transcription start site region 109770
Tssr109771 11 84823588 to 84823610 22 - TSS region transcription start site region 109771
Tssr109772 11 84823668 to 84823695 27 - TSS region transcription start site region 109772
Tssr109773 11 84823718 to 84823729 11 - TSS region transcription start site region 109773
Tssr109774 11 84825593 to 84825604 11 - TSS region transcription start site region 109774
Tssr109775 11 84826283 to 84826301 18 - TSS region transcription start site region 109775
Tssr109776 11 84827274 to 84827294 20 - TSS region transcription start site region 109776
Tssr109777 11 84827298 to 84827311 13 - TSS region transcription start site region 109777
Tssr109778 11 84827361 to 84827374 13 - TSS region transcription start site region 109778
Tssr109779 11 84827646 to 84827656 10 - TSS region transcription start site region 109779
Cpgi3444 11 84828539 to 84829598 1059 CpG island CpG island 3444
Tssr109780 11 84828935 to 84828944 9 - TSS region transcription start site region 109780
Tssr109781 11 84828953 to 84828966 13 - TSS region transcription start site region 109781
Tssr109782 11 84828981 to 84829023 42 - TSS region transcription start site region 109782
Tssr109783 11 84829123 to 84829132 9 - TSS region transcription start site region 109783
4930502E09Rik 11 84829178 to 84830868 1690 + lncRNA gene RIKEN cDNA 4930502E09 gene
Ggnbp2 11 84832361 to 84870779 38418 - protein coding gene gametogenetin binding protein 2
Tssr109784 11 84840301 to 84840330 29 - TSS region transcription start site region 109784
Tssr109785 11 84840365 to 84840377 12 - TSS region transcription start site region 109785
D11Mit195 11 84840498 to 84840636 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 195
Tssr109786 11 84846300 to 84846331 31 - TSS region transcription start site region 109786
Tssr109787 11 84846481 to 84846502 21 - TSS region transcription start site region 109787
D11Ertd437e 11 84851106 to 84851316 210 DNA segment DNA segment, Chr 11, ERATO Doi 437, expressed
Tssr109788 11 84860601 to 84860630 29 - TSS region transcription start site region 109788
Cpgi3445 11 84869524 to 84871274 1750 CpG island CpG island 3445
Ggnbp2os 11 84870005 to 84871631 1626 + lncRNA gene gametogenetin binding protein 2, opposite strand
Tssr109789 11 84870031 to 84870107 76 - TSS region transcription start site region 109789
Tssr109790 11 84870128 to 84870182 54 - TSS region transcription start site region 109790
Tssr109791 11 84870188 to 84870230 42 - TSS region transcription start site region 109791
Tssr109792 11 84870696 to 84870711 15 - TSS region transcription start site region 109792
Tssr109793 11 84870712 to 84870807 95 - TSS region transcription start site region 109793
Tssr109794 11 84870812 to 84870823 11 - TSS region transcription start site region 109794
Tssr103808 11 84870861 to 84870921 60 + TSS region transcription start site region 103808
Tssr109795 11 84871734 to 84871738 4 - TSS region transcription start site region 109795
Pigw 11 84876315 to 84880285 3970 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class W
Cpgi3446 11 84879650 to 84880924 1274 CpG island CpG island 3446
Tssr103809 11 84879880 to 84879922 42 + TSS region transcription start site region 103809
Myo19 11 84880192 to 84911131 30939 + protein coding gene myosin XIX
Tssr109796 11 84880249 to 84880299 50 - TSS region transcription start site region 109796
Tssr103810 11 84880308 to 84880373 65 + TSS region transcription start site region 103810
Tssr103811 11 84880376 to 84880391 15 + TSS region transcription start site region 103811
Gm23564 11 84893087 to 84893153 66 + miRNA gene predicted gene, 23564
Tssr103812 11 84901129 to 84901146 17 + TSS region transcription start site region 103812
Znhit3 11 84910950 to 84916356 5406 - protein coding gene zinc finger, HIT type 3
Cpgi3447 11 84915985 to 84916485 500 CpG island CpG island 3447
Tssr109797 11 84916234 to 84916260 26 - TSS region transcription start site region 109797
Tssr109798 11 84916338 to 84916371 33 - TSS region transcription start site region 109798
D11Mit221 11 84929345 to 84929451 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 221
Gm33028 11 84940261 to 84943855 3594 + lncRNA gene predicted gene, 33028
Gm32917 11 84943891 to 84951103 7212 - lncRNA gene predicted gene, 32917
Cpgi3448 11 84943960 to 84944153 193 CpG island CpG island 3448
Tssr109799 11 84944789 to 84944800 11 - TSS region transcription start site region 109799
Tssr103813 11 84944914 to 84944921 7 + TSS region transcription start site region 103813
Cpgi3449 11 84957521 to 84958385 864 CpG island CpG island 3449
Tssr103814 11 84957775 to 84957799 24 + TSS region transcription start site region 103814
Car4 11 84957786 to 84966044 8258 + protein coding gene carbonic anhydrase 4
Tssr103815 11 84957802 to 84957813 11 + TSS region transcription start site region 103815
Tssr103816 11 84957817 to 84957835 18 + TSS region transcription start site region 103816
D11Mit121 11 84970026 to 84970145 119 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 121
Usp32 11 84984437 to 85140042 155605 - protein coding gene ubiquitin specific peptidase 32
Tssr109800 11 85038348 to 85038351 3 - TSS region transcription start site region 109800
Gm9365 11 85069600 to 85073884 4284 + pseudogene predicted gene 9365
Gm11440 11 85072469 to 85072995 526 - pseudogene predicted gene 11440
Tssr109801 11 85083478 to 85083484 6 - TSS region transcription start site region 109801
Tssr109802 11 85094122 to 85094126 4 - TSS region transcription start site region 109802
Gm11439 11 85095141 to 85095549 408 - pseudogene predicted gene 11439
Tssr103817 11 85111077 to 85111089 12 + TSS region transcription start site region 103817
Gm18157 11 85111088 to 85111829 741 + pseudogene predicted gene, 18157
Rpl13-ps1 11 85111126 to 85111793 667 - pseudogene ribosomal protein L13, pseudogene 1
Cpgi3450 11 85139359 to 85140611 1252 CpG island CpG island 3450
Tssr109803 11 85139899 to 85139922 23 - TSS region transcription start site region 109803
Tssr109804 11 85139939 to 85139971 32 - TSS region transcription start site region 109804
D11Mit159 11 85154238 to 85154359 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 159
Gm23506 11 85163077 to 85163183 106 + snRNA gene predicted gene, 23506
Cpgi3451 11 85170104 to 85170382 278 CpG island CpG island 3451
1700125H20Rik 11 85170404 to 85181145 10741 + protein coding gene RIKEN cDNA 1700125H20 gene
Tssr3620 11 85171068 to 85171073 5 + TSS region transcription start site region 3620
Tssr103818 11 85171074 to 85171086 12 + TSS region transcription start site region 103818
Tssr103819 11 85171097 to 85171104 7 + TSS region transcription start site region 103819
D11Mit178 11 85175558 to 85175703 145 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 178
Tssr3621 11 85177998 to 85178011 13 + TSS region transcription start site region 3621
Tssr103820 11 85178034 to 85178041 7 + TSS region transcription start site region 103820
Cpgi3452 11 85182952 to 85183418 466 CpG island CpG island 3452
Appbp2 11 85191308 to 85235120 43812 - protein coding gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2
Tssr103821 11 85194333 to 85194352 19 + TSS region transcription start site region 103821
Tssr103822 11 85194357 to 85194370 13 + TSS region transcription start site region 103822
Gm38935 11 85204331 to 85231641 27310 + lncRNA gene predicted gene, 38935
Akirin1-ps 11 85216597 to 85217054 457 + pseudogene akirin 1, pseudogene
Cpgi3453 11 85234337 to 85235684 1347 CpG island CpG island 3453
Tssr109805 11 85234807 to 85234840 33 - TSS region transcription start site region 109805
Tssr109806 11 85234867 to 85234914 47 - TSS region transcription start site region 109806
Tssr109807 11 85235065 to 85235137 72 - TSS region transcription start site region 109807
Appbp2os 11 85235166 to 85238304 3138 + antisense lncRNA gene amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand
Gm22587 11 85297452 to 85297749 297 - unclassified non-coding RNA gene predicted gene, 22587
Cpgi3454 11 85310590 to 85312235 1645 CpG island CpG island 3454
Tssr109808 11 85311072 to 85311103 31 - TSS region transcription start site region 109808
Tssr103823 11 85311190 to 85311210 20 + TSS region transcription start site region 103823
Tssr103824 11 85311232 to 85311286 54 + TSS region transcription start site region 103824
Ppm1d 11 85311254 to 85347071 35817 + protein coding gene protein phosphatase 1D magnesium-dependent, delta isoform
Tssr103825 11 85311289 to 85311325 36 + TSS region transcription start site region 103825
Tssr103826 11 85311346 to 85311395 49 + TSS region transcription start site region 103826
Tssr103827 11 85311401 to 85311412 11 + TSS region transcription start site region 103827
Tssr109809 11 85312053 to 85312097 44 - TSS region transcription start site region 109809
Tssr103828 11 85312138 to 85312149 11 + TSS region transcription start site region 103828
Tssr103829 11 85312172 to 85312180 8 + TSS region transcription start site region 103829
Tssr103830 11 85339668 to 85339677 9 + TSS region transcription start site region 103830
Tssr103831 11 85339699 to 85339759 60 + TSS region transcription start site region 103831
Tssr103832 11 85341127 to 85341133 6 + TSS region transcription start site region 103832
Cpgi3455 11 85352600 to 85353452 852 CpG island CpG island 3455
Tssr109810 11 85352625 to 85352640 15 - TSS region transcription start site region 109810
Tssr103833 11 85352775 to 85352797 22 + TSS region transcription start site region 103833
Tssr103834 11 85353156 to 85353219 63 + TSS region transcription start site region 103834
Bcas3 11 85353167 to 85826058 472891 + protein coding gene breast carcinoma amplified sequence 3
Tssr103835 11 85492720 to 85492732 12 + TSS region transcription start site region 103835
Tssr103836 11 85492737 to 85492751 14 + TSS region transcription start site region 103836
Gm23765 11 85493759 to 85493905 146 + snRNA gene predicted gene, 23765
Tssr109811 11 85524944 to 85524951 7 - TSS region transcription start site region 109811
Tssr109812 11 85546641 to 85546642 1 - TSS region transcription start site region 109812
Tssr103837 11 85549592 to 85549595 3 + TSS region transcription start site region 103837
D11Mit324 11 85583427 to 85583528 101 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 324
D11Mit220 11 85583428 to 85583540 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 220
D11Mit324.2 11 85583506 to 85583678 172 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 324.2
7030407E18Rik 11 85598479 to 85602216 3737 unclassified gene RIKEN cDNA 7030407E18 gene
Tssr103838 11 85614820 to 85614824 4 + TSS region transcription start site region 103838