Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:80479301-80839490

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdk5r1 11 80477046 to 80481179 4133 + protein coding gene cyclin-dependent kinase 5, regulatory subunit 1 (p35)
Tssr103545 11 80480955 to 80480965 10 + TSS region transcription start site region 103545
Myo1d 11 80482126 to 80780025 297899 - protein coding gene myosin ID
Cpgi3387 11 80484129 to 80484365 236 CpG island CpG island 3387
Tssr103546 11 80495044 to 80495051 7 + TSS region transcription start site region 103546
Tssr3600 11 80495069 to 80495081 12 + TSS region transcription start site region 3600
Tssr3601 11 80504687 to 80504691 4 + TSS region transcription start site region 3601
Tssr109544 11 80505077 to 80505093 16 - TSS region transcription start site region 109544
Tssr103547 11 80505254 to 80505276 22 + TSS region transcription start site region 103547
Tssr103548 11 80505313 to 80505331 18 + TSS region transcription start site region 103548
C030013C21Rik 11 80507410 to 80509106 1696 - sense intronic lncRNA gene RIKEN cDNA C030013C21 gene
D11Bhm122 11 80509021 to 80509124 103 DNA segment DNA segment, Chr 11, Boehm 122
Gm31109 11 80509284 to 80511281 1997 + lncRNA gene predicted gene, 31109
Tssr103549 11 80509314 to 80509331 17 + TSS region transcription start site region 103549
Tssr103550 11 80509797 to 80509798 1 + TSS region transcription start site region 103550
D11Mit118 11 80574588 to 80574758 170 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 118
Cpgi3388 11 80603161 to 80603369 208 CpG island CpG island 3388
Gm38907 11 80617865 to 80676041 58176 + lncRNA gene predicted gene, 38907
D11Bhm123 11 80659301 to 80659490 189 DNA segment DNA segment, Chr 11, Boehm 123
Gm31042 11 80722910 to 80728012 5102 + lncRNA gene predicted gene, 31042
D11Bhm124 11 80747245 to 80747438 193 DNA segment DNA segment, Chr 11, Boehm 124
Cpgi3389 11 80779325 to 80780558 1233 CpG island CpG island 3389
Tssr109545 11 80779799 to 80779841 42 - TSS region transcription start site region 109545
Tssr109546 11 80779918 to 80779929 11 - TSS region transcription start site region 109546
Tssr109547 11 80779967 to 80779984 17 - TSS region transcription start site region 109547
Tssr109548 11 80779989 to 80780033 44 - TSS region transcription start site region 109548
D11Bhm125 11 80782218 to 80782372 154 DNA segment DNA segment, Chr 11, Boehm 125
D11Bhm126 11 80787232 to 80787296 64 DNA segment DNA segment, Chr 11, Boehm 126
Tssr109549 11 80789863 to 80789864 1 - TSS region transcription start site region 109549
D11Mit92 11 80804901 to 80805034 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 92
Gm31228 11 80805815 to 80815685 9870 - lncRNA gene predicted gene, 31228
Cpgi3390 11 80810003 to 80810811 808 CpG island CpG island 3390
Tssr103551 11 80810357 to 80810404 47 + TSS region transcription start site region 103551
Tmem98 11 80810415 to 80822033 11618 + protein coding gene transmembrane protein 98
Gm45953 11 80815706 to 80821184 5478 - lncRNA gene predicted gene, 45953
D11Bhm168 11 80819243 to 80819333 90 DNA segment DNA segment, Chr 11, Boehm 168
Tssr103552 11 80821232 to 80821243 11 + TSS region transcription start site region 103552
Gm11207 11 80822780 to 80823193 413 - pseudogene predicted gene 11207
D11Bhm127 11 80823210 to 80823296 86 DNA segment DNA segment, Chr 11, Boehm 127