Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:78354586-78454607

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Foxn1 11 78357577 to 78386558 28981 - protein coding gene forkhead box N1
D11Seg20 11 78357760 to 78357929 169 DNA segment DNA segment, Chr 11, Segre 20
Cpgi3344 11 78358411 to 78359017 606 CpG island CpG island 3344
Tssr103293 11 78360730 to 78360777 47 + TSS region transcription start site region 103293
D11Seg19 11 78361473 to 78361608 135 DNA segment DNA segment, Chr 11, Segre 19
Gm30367 11 78372883 to 78376582 3699 + lncRNA gene predicted gene, 30367
Tssr109390 11 78379034 to 78379040 6 - TSS region transcription start site region 109390
D11Seg23 11 78384240 to 78384551 311 DNA segment DNA segment, Chr 11, Segre 23
Tssr109391 11 78386394 to 78386413 19 - TSS region transcription start site region 109391
Tssr109392 11 78386569 to 78386598 29 - TSS region transcription start site region 109392
Tssr109393 11 78386693 to 78386709 16 - TSS region transcription start site region 109393
Tssr103294 11 78394478 to 78394489 11 + TSS region transcription start site region 103294
Slc13a2os 11 78394485 to 78405657 11172 + antisense lncRNA gene solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand
Tssr103295 11 78394493 to 78394505 12 + TSS region transcription start site region 103295
Slc13a2 11 78397276 to 78422277 25001 - protein coding gene solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
Cpgi3345 11 78397394 to 78397715 321 CpG island CpG island 3345
Tssr109394 11 78400818 to 78400829 11 - TSS region transcription start site region 109394
Tssr3588 11 78401383 to 78401384 1 + TSS region transcription start site region 3588
Tssr109395 11 78404574 to 78404583 9 - TSS region transcription start site region 109395
Tssr109396 11 78404586 to 78404607 21 - TSS region transcription start site region 109396
Tssr109397 11 78404622 to 78404636 14 - TSS region transcription start site region 109397
Tssr103296 11 78404700 to 78404732 32 + TSS region transcription start site region 103296
D11Bhm54 11 78417497 to 78417754 257 DNA segment DNA segment, Chr 11, Boehm 54
D11Seg25 11 78417546 to 78417719 173 DNA segment DNA segment, Chr 11, Segre 25
D11Seg26 11 78419393 to 78419559 166 DNA segment DNA segment, Chr 11, Segre 26
Tssr109398 11 78422223 to 78422240 17 - TSS region transcription start site region 109398
Cpgi3346 11 78436012 to 78436189 177 CpG island CpG island 3346
Tssr109399 11 78437291 to 78437292 1 - TSS region transcription start site region 109399
D11Bhm55 11 78440991 to 78441051 60 DNA segment DNA segment, Chr 11, Boehm 55
Gm11195 11 78444107 to 78444901 794 + lincRNA gene predicted gene 11195
D11Seg29 11 78445871 to 78446036 165 DNA segment DNA segment, Chr 11, Segre 29
D11Bhm56 11 78445880 to 78446083 203 DNA segment DNA segment, Chr 11, Boehm 56