Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:78084950-78185112

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D11Seg1 11 78087165 to 78087261 96 DNA segment DNA segment, Chr 11, Segre 1
Cpgi3329 11 78094496 to 78095163 667 CpG island CpG island 3329
Fam222b 11 78094660 to 78156700 62040 + protein coding gene family with sequence similarity 222, member B
Tssr103223 11 78094667 to 78094678 11 + TSS region transcription start site region 103223
Tssr103224 11 78094682 to 78094696 14 + TSS region transcription start site region 103224
Tssr103225 11 78094726 to 78094737 11 + TSS region transcription start site region 103225
Tssr103226 11 78100272 to 78100276 4 + TSS region transcription start site region 103226
Tssr109371 11 78100848 to 78100861 13 - TSS region transcription start site region 109371
Tssr3585 11 78100885 to 78100897 12 - TSS region transcription start site region 3585
D11Seg2 11 78114174 to 78114354 180 DNA segment DNA segment, Chr 11, Segre 2
Cpgi3330 11 78115203 to 78115865 662 CpG island CpG island 3330
Tssr103227 11 78115565 to 78115601 36 + TSS region transcription start site region 103227
D11Bhm47 11 78120900 to 78121018 118 DNA segment DNA segment, Chr 11, Boehm 47
D11Seg3 11 78134950 to 78135112 162 DNA segment DNA segment, Chr 11, Segre 3
D11Seg4 11 78144095 to 78144316 221 DNA segment DNA segment, Chr 11, Segre 4
Gm12571 11 78149196 to 78149438 242 - pseudogene predicted gene 12571
Tssr3586 11 78149460 to 78149485 25 - TSS region transcription start site region 3586
D11Seg24 11 78152988 to 78153129 141 DNA segment DNA segment, Chr 11, Segre 24
Traf4 11 78158499 to 78165589 7090 - protein coding gene TNF receptor associated factor 4
Tssr109372 11 78160910 to 78160929 19 - TSS region transcription start site region 109372
Cpgi3331 11 78164336 to 78166071 1735 CpG island CpG island 3331
D11Seg5 11 78164384 to 78164581 197 DNA segment DNA segment, Chr 11, Segre 5
Tssr109373 11 78165521 to 78165551 30 - TSS region transcription start site region 109373
Tssr103228 11 78165633 to 78165660 27 + TSS region transcription start site region 103228
Tssr103229 11 78165665 to 78165687 22 + TSS region transcription start site region 103229
Nek8 11 78166106 to 78176675 10569 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 8
Tssr109374 11 78166771 to 78166807 36 - TSS region transcription start site region 109374
Cpgi3332 11 78169285 to 78169483 198 CpG island CpG island 3332
D11Seg6 11 78171232 to 78171409 177 DNA segment DNA segment, Chr 11, Segre 6
Cpgi3333 11 78176430 to 78177299 869 CpG island CpG island 3333
Tssr109375 11 78176619 to 78176660 41 - TSS region transcription start site region 109375
Tlcd1 11 78176716 to 78180820 4104 + protein coding gene TLC domain containing 1
Tssr103230 11 78176735 to 78176761 26 + TSS region transcription start site region 103230
Tssr109376 11 78176964 to 78176978 14 - TSS region transcription start site region 109376
Tssr103231 11 78177229 to 78177235 6 + TSS region transcription start site region 103231
Cpgi3334 11 78177800 to 78179401 1601 CpG island CpG island 3334
Tssr103232 11 78178105 to 78178147 42 + TSS region transcription start site region 103232
Tssr109377 11 78178523 to 78178596 73 - TSS region transcription start site region 109377
Tssr103233 11 78178676 to 78178695 19 + TSS region transcription start site region 103233
Tssr103234 11 78178703 to 78178772 69 + TSS region transcription start site region 103234
Mir7653 11 78178827 to 78178887 60 + miRNA gene microRNA 7653
Tssr103235 11 78178958 to 78178986 28 + TSS region transcription start site region 103235
Tssr103236 11 78178989 to 78179002 13 + TSS region transcription start site region 103236
Rpl23a 11 78180935 to 78183584 2649 - protein coding gene ribosomal protein L23A
Snord42a 11 78181302 to 78181346 44 - snoRNA gene small nucleolar RNA, C/D box 42A
Snord4a 11 78181687 to 78181756 69 - snoRNA gene small nucleolar RNA, C/D box 4A
Snord42b 11 78183059 to 78183113 54 - snoRNA gene small nucleolar RNA, C/D box 42B
Cpgi3335 11 78183139 to 78183568 429 CpG island CpG island 3335
Tssr109378 11 78183172 to 78183216 44 - TSS region transcription start site region 109378
Tssr109379 11 78183551 to 78183574 23 - TSS region transcription start site region 109379