Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:62569402-63009443

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acigg5 11 46528416 to 62992617 16464201 QTL anti COL7 IgG2a/c antibody 5
Tssr108432 11 62574082 to 62574085 3 - TSS region transcription start site region 108432
Tssr102038 11 62574477 to 62574522 45 + TSS region transcription start site region 102038
Trpv2 11 62574486 to 62600305 25819 + protein coding gene transient receptor potential cation channel, subfamily V, member 2
Tssr102039 11 62574523 to 62574552 29 + TSS region transcription start site region 102039
Tssr102040 11 62574573 to 62574584 11 + TSS region transcription start site region 102040
Tssr102041 11 62575618 to 62575642 24 + TSS region transcription start site region 102041
Cpgi3026 11 62575825 to 62576231 406 CpG island CpG island 3026
Tssr102042 11 62575877 to 62575890 13 + TSS region transcription start site region 102042
Tssr102043 11 62575897 to 62575933 36 + TSS region transcription start site region 102043
Tssr102044 11 62575935 to 62575964 29 + TSS region transcription start site region 102044
Tssr102045 11 62575981 to 62575992 11 + TSS region transcription start site region 102045
Tssr102046 11 62576025 to 62576032 7 + TSS region transcription start site region 102046
Tssr102047 11 62583898 to 62583921 23 + TSS region transcription start site region 102047
Cpgi3027 11 62602482 to 62603503 1021 CpG island CpG island 3027
Tssr102048 11 62602867 to 62602886 19 + TSS region transcription start site region 102048
2410006H16Rik 11 62602877 to 62604806 1929 + lncRNA gene RIKEN cDNA 2410006H16 gene
Tssr102049 11 62602957 to 62602991 34 + TSS region transcription start site region 102049
Tssr102050 11 62603061 to 62603078 17 + TSS region transcription start site region 102050
Snord49b 11 62603086 to 62603148 62 + snoRNA gene small nucleolar RNA, C/D box 49B
Tssr102051 11 62603115 to 62603166 51 + TSS region transcription start site region 102051
Tssr102052 11 62603181 to 62603192 11 + TSS region transcription start site region 102052
Tssr102053 11 62603447 to 62603457 10 + TSS region transcription start site region 102053
Snord49a 11 62603460 to 62603521 61 + snoRNA gene small nucleolar RNA, C/D box 49A
Snord65 11 62604530 to 62604586 56 + snoRNA gene small nucleolar RNA, C/D box 65
Lrrc75a 11 62604884 to 62648523 43639 - protein coding gene leucine rich repeat containing 75A
Tssr102054 11 62605728 to 62605778 50 + TSS region transcription start site region 102054
Lrrc75aos2 11 62605766 to 62607748 1982 + antisense lncRNA gene leucine rich repeat containing 75A, opposite strand 2
Tssr108433 11 62617134 to 62617138 4 - TSS region transcription start site region 108433
Lrrc75aos1 11 62634704 to 62638788 4084 + antisense lncRNA gene leucine rich repeat containing 75A, opposite strand 1
Cpgi3028 11 62647743 to 62649143 1400 CpG island CpG island 3028
Tssr108434 11 62648034 to 62648050 16 - TSS region transcription start site region 108434
Tssr3517 11 62648155 to 62648188 33 + TSS region transcription start site region 3517
Tssr108435 11 62648458 to 62648514 56 - TSS region transcription start site region 108435
Tssr108436 11 62648563 to 62648591 28 - TSS region transcription start site region 108436
Tssr102055 11 62648656 to 62648685 29 + TSS region transcription start site region 102055
Mmgt2 11 62648664 to 62666354 17690 + protein coding gene membrane magnesium transporter 2
Tssr102056 11 62648686 to 62648700 14 + TSS region transcription start site region 102056
Tssr102057 11 62648766 to 62648781 15 + TSS region transcription start site region 102057
Tssr102058 11 62648782 to 62648790 8 + TSS region transcription start site region 102058
Tssr102059 11 62648811 to 62648828 17 + TSS region transcription start site region 102059
Tssr102060 11 62648830 to 62648839 9 + TSS region transcription start site region 102060
Tssr102061 11 62650487 to 62650502 15 + TSS region transcription start site region 102061
Cpgi3029 11 62664714 to 62665124 410 CpG island CpG island 3029
Gm12281 11 62697218 to 62697515 297 + pseudogene predicted gene 12281
Zfp287 11 62700356 to 62731905 31549 - protein coding gene zinc finger protein 287
Cpgi3030 11 62731454 to 62732114 660 CpG island CpG island 3030
Tssr108437 11 62731865 to 62731910 45 - TSS region transcription start site region 108437
Cpgi3031 11 62745982 to 62746481 499 CpG island CpG island 3031
n-TWcca8 11 62746015 to 62746086 71 - tRNA gene nuclear encoded tRNA trytophan 8 (anticodon CCA)
Gm27194 11 62749852 to 62752787 2935 + lincRNA gene predicted gene 27194
Wsb2-ps 11 62750064 to 62751280 1216 - pseudogene WD repeat and SOCS box-containing 2, pseudogene
Cpgi3032 11 62751094 to 62751445 351 CpG island CpG island 3032
Gm10428 11 62753100 to 62753498 398 + protein coding gene predicted gene 10428
Cpgi3033 11 62756670 to 62757284 614 CpG island CpG island 3033
Tssr108438 11 62760525 to 62760568 43 - TSS region transcription start site region 108438
Tssr102062 11 62760601 to 62760628 27 + TSS region transcription start site region 102062
Tssr102063 11 62761027 to 62761051 24 + TSS region transcription start site region 102063
Zfp286os 11 62761236 to 62765554 4318 + antisense lncRNA gene zinc finger protein 286, opposite strand
Gm24151 11 62776985 to 62777125 140 + snoRNA gene predicted gene, 24151
Zfp286 11 62778387 to 62789483 11096 - protein coding gene zinc finger protein 286
Cpgi3034 11 62789009 to 62789778 769 CpG island CpG island 3034
Tssr108439 11 62789402 to 62789443 41 - TSS region transcription start site region 108439
Tssr108440 11 62789445 to 62789478 33 - TSS region transcription start site region 108440
Trim16 11 62820191 to 62842948 22757 + protein coding gene tripartite motif-containing 16
Tssr102064 11 62820430 to 62820447 17 + TSS region transcription start site region 102064
Tssr102065 11 62820471 to 62820489 18 + TSS region transcription start site region 102065
Tssr102066 11 62842755 to 62842760 5 + TSS region transcription start site region 102066
Tssr102067 11 62847062 to 62847087 25 + TSS region transcription start site region 102067
Fbxw10 11 62847069 to 62877465 30396 + protein coding gene F-box and WD-40 domain protein 10
Tssr102068 11 62847090 to 62847103 13 + TSS region transcription start site region 102068
Tssr102069 11 62847111 to 62847132 21 + TSS region transcription start site region 102069
Tssr102070 11 62862109 to 62862114 5 + TSS region transcription start site region 102070
Cpgi3035 11 62879274 to 62880070 796 CpG island CpG island 3035
Tvp23b 11 62879435 to 62895186 15751 + protein coding gene trans-golgi network vesicle protein 23B
Tssr102071 11 62879449 to 62879536 87 + TSS region transcription start site region 102071
Tssr102072 11 62879560 to 62879580 20 + TSS region transcription start site region 102072
Tssr108441 11 62915532 to 62915535 3 - TSS region transcription start site region 108441
Tvp23bos 11 62919079 to 62921592 2513 - antisense lncRNA gene trans-golgi network vesicle protein 23B, opposite strand
Gm36614 11 62933253 to 62939590 6337 + lncRNA gene predicted gene, 36614
Cdrt4os2 11 62950425 to 62951079 654 - antisense lncRNA gene CMT1A duplicated region transcript 4, opposite strand 2
Tssr108442 11 62951095 to 62951110 15 - TSS region transcription start site region 108442
Tssr102073 11 62951155 to 62951159 4 + TSS region transcription start site region 102073
Tssr102074 11 62951178 to 62951185 7 + TSS region transcription start site region 102074
Tssr102075 11 62951191 to 62951195 4 + TSS region transcription start site region 102075
Cdrt4 11 62951193 to 62993095 41902 + protein coding gene CMT1A duplicated region transcript 4
Tssr102076 11 62951197 to 62951231 34 + TSS region transcription start site region 102076
Cdrt4os1 11 62990453 to 63004134 13681 - antisense lncRNA gene CMT1A duplicated region transcript 4, opposite strand 1
Gm46284 11 62994326 to 63000140 5814 + lncRNA gene predicted gene, 46284