Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:60146714-60432905

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rai1 11 60105013 to 60199197 94184 + protein coding gene retinoic acid induced 1
Cpgi2978 11 60175339 to 60177557 2218 CpG island CpG island 2978
Tssr101880 11 60175857 to 60175887 30 + TSS region transcription start site region 101880
Tssr108276 11 60176613 to 60176660 47 - TSS region transcription start site region 108276
Srebf1 11 60199089 to 60222581 23492 - protein coding gene sterol regulatory element binding transcription factor 1
Tssr108277 11 60199419 to 60199453 34 - TSS region transcription start site region 108277
Cpgi2979 11 60199823 to 60200175 352 CpG island CpG island 2979
Mir6921 11 60200538 to 60200617 79 - miRNA gene microRNA 6921
Mir6922 11 60202262 to 60202327 65 - miRNA gene microRNA 6922
Cpgi2980 11 60210010 to 60211136 1126 CpG island CpG island 2980
Tssr108278 11 60210410 to 60210428 18 - TSS region transcription start site region 108278
Cpgi2981 11 60220234 to 60220894 660 CpG island CpG island 2981
Tssr108279 11 60220537 to 60220548 11 - TSS region transcription start site region 108279
Tssr108280 11 60220550 to 60220632 82 - TSS region transcription start site region 108280
Cpgi2982 11 60222526 to 60223243 717 CpG island CpG island 2982
Tssr108281 11 60222756 to 60222774 18 - TSS region transcription start site region 108281
Tssr108282 11 60222832 to 60222852 20 - TSS region transcription start site region 108282
Tssr108283 11 60222854 to 60222872 18 - TSS region transcription start site region 108283
Tom1l2 11 60226714 to 60352905 126191 - protein coding gene target of myb1-like 2 (chicken)
Tssr108284 11 60229766 to 60229780 14 - TSS region transcription start site region 108284
Tssr108285 11 60239725 to 60239742 17 - TSS region transcription start site region 108285
Tssr108286 11 60239979 to 60240002 23 - TSS region transcription start site region 108286
Tssr101881 11 60240727 to 60240739 12 + TSS region transcription start site region 101881
Gm12265 11 60240810 to 60241930 1120 + antisense lncRNA gene predicted gene 12265
Gm38501 11 60254661 to 60258543 3882 - lncRNA gene predicted gene, 38501
Tssr108287 11 60263382 to 60263393 11 - TSS region transcription start site region 108287
Tssr108288 11 60296590 to 60296624 34 - TSS region transcription start site region 108288
Gm27711 11 60302707 to 60302824 117 - miRNA gene predicted gene, 27711
Gm12266 11 60343245 to 60344206 961 + pseudogene predicted gene 12266
Cpgi2983 11 60352479 to 60353380 901 CpG island CpG island 2983
Tssr108289 11 60352869 to 60352896 27 - TSS region transcription start site region 108289
Tssr108290 11 60352927 to 60352932 5 - TSS region transcription start site region 108290
Tssr101882 11 60353076 to 60353090 14 + TSS region transcription start site region 101882
Tssr101883 11 60353324 to 60353408 84 + TSS region transcription start site region 101883
Drc3 11 60353329 to 60394341 41012 + protein coding gene dynein regulatory complex subunit 3
Tssr101884 11 60388190 to 60388213 23 + TSS region transcription start site region 101884
Atpaf2 11 60400626 to 60418457 17831 - protein coding gene ATP synthase mitochondrial F1 complex assembly factor 2
Cpgi2984 11 60416616 to 60418265 1649 CpG island CpG island 2984
Tssr108291 11 60417022 to 60417056 34 - TSS region transcription start site region 108291
Tssr101885 11 60417128 to 60417133 5 + TSS region transcription start site region 101885
Gid4 11 60417145 to 60445277 28132 + protein coding gene GID complex subunit 4, VID24 homolog
Tssr101886 11 60417152 to 60417181 29 + TSS region transcription start site region 101886
Tssr101887 11 60417188 to 60417195 7 + TSS region transcription start site region 101887
Tssr101888 11 60417238 to 60417301 63 + TSS region transcription start site region 101888
Tssr101889 11 60417304 to 60417330 26 + TSS region transcription start site region 101889
Tssr101890 11 60417542 to 60417600 58 + TSS region transcription start site region 101890
Tssr101891 11 60417607 to 60417625 18 + TSS region transcription start site region 101891
Tssr108292 11 60417928 to 60417970 42 - TSS region transcription start site region 108292
Tssr108293 11 60418582 to 60418608 26 - TSS region transcription start site region 108293