Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:59416973-59547277

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snap47 11 59407141 to 59450034 42893 - protein coding gene synaptosomal-associated protein, 47
Tssr108218 11 59421620 to 59421636 16 - TSS region transcription start site region 108218
Tssr108219 11 59430117 to 59430121 4 - TSS region transcription start site region 108219
Cpgi2962 11 59449459 to 59450721 1262 CpG island CpG island 2962
Tssr108220 11 59449941 to 59449950 9 - TSS region transcription start site region 108220
Tssr108221 11 59449953 to 59450035 82 - TSS region transcription start site region 108221
Tssr101796 11 59450040 to 59450095 55 + TSS region transcription start site region 101796
Jmjd4 11 59450045 to 59458567 8522 + protein coding gene jumonji domain containing 4
Tssr101797 11 59450130 to 59450140 10 + TSS region transcription start site region 101797
Zfp867 11 59461197 to 59472474 11277 - protein coding gene zinc finger protein 867
Cpgi2963 11 59471880 to 59472599 719 CpG island CpG island 2963
Tssr108222 11 59472432 to 59472460 28 - TSS region transcription start site region 108222
Tssr108223 11 59472464 to 59472488 24 - TSS region transcription start site region 108223
Gm12263 11 59474287 to 59475765 1478 - pseudogene predicted gene 12263
Gm12262 11 59481973 to 59482277 304 + pseudogene predicted gene 12262
Zkscan17 11 59485520 to 59506640 21120 - protein coding gene zinc finger with KRAB and SCAN domains 17
Tssr108224 11 59490074 to 59490075 1 - TSS region transcription start site region 108224
Tssr108225 11 59500193 to 59500198 5 - TSS region transcription start site region 108225
Cpgi2964 11 59505294 to 59506958 1664 CpG island CpG island 2964
Tssr101798 11 59505636 to 59505683 47 + TSS region transcription start site region 101798
4933439C10Rik 11 59505653 to 59511385 5732 + lncRNA gene RIKEN cDNA 4933439C10 gene
Tssr108226 11 59506199 to 59506239 40 - TSS region transcription start site region 108226
Tssr108227 11 59506294 to 59506299 5 - TSS region transcription start site region 108227
Tssr108228 11 59506392 to 59506408 16 - TSS region transcription start site region 108228
Tssr108229 11 59506419 to 59506442 23 - TSS region transcription start site region 108229
Tssr108230 11 59506445 to 59506456 11 - TSS region transcription start site region 108230
Tssr108231 11 59506526 to 59506597 71 - TSS region transcription start site region 108231
Tssr108232 11 59523724 to 59523727 3 - TSS region transcription start site region 108232
Tssr108233 11 59526619 to 59526660 41 - TSS region transcription start site region 108233
Tssr108234 11 59526691 to 59526711 20 - TSS region transcription start site region 108234
Tssr108235 11 59526858 to 59526885 27 - TSS region transcription start site region 108235
Tssr3513 11 59541400 to 59541446 46 - TSS region transcription start site region 3513
Nlrp3 11 59541569 to 59566956 25387 + protein coding gene NLR family, pyrin domain containing 3
Tssr101799 11 59541578 to 59541591 13 + TSS region transcription start site region 101799
Tssr101800 11 59541601 to 59541615 14 + TSS region transcription start site region 101800
Tssr101801 11 59541654 to 59541666 12 + TSS region transcription start site region 101801
Tssr108236 11 59542503 to 59542543 40 - TSS region transcription start site region 108236
Tssr101802 11 59542627 to 59542644 17 + TSS region transcription start site region 101802
Tssr101803 11 59542666 to 59542677 11 + TSS region transcription start site region 101803
Tssr101804 11 59542701 to 59542726 25 + TSS region transcription start site region 101804
Tssr101805 11 59542730 to 59542747 17 + TSS region transcription start site region 101805
Tssr101806 11 59542748 to 59542775 27 + TSS region transcription start site region 101806
Tssr101807 11 59542799 to 59542810 11 + TSS region transcription start site region 101807
Tssr101808 11 59542881 to 59542892 11 + TSS region transcription start site region 101808
Tssr101809 11 59542961 to 59542967 6 + TSS region transcription start site region 101809
Tssr101810 11 59542983 to 59543001 18 + TSS region transcription start site region 101810
Tssr101811 11 59543014 to 59543031 17 + TSS region transcription start site region 101811
Tssr101812 11 59543032 to 59543039 7 + TSS region transcription start site region 101812
Tssr101813 11 59543040 to 59543058 18 + TSS region transcription start site region 101813
Tssr101814 11 59543062 to 59543071 9 + TSS region transcription start site region 101814
Tssr101815 11 59543355 to 59543364 9 + TSS region transcription start site region 101815
Tssr101816 11 59543572 to 59543607 35 + TSS region transcription start site region 101816
Tssr108237 11 59544124 to 59544160 36 - TSS region transcription start site region 108237