Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:58964818-59125092

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim17 11 58954702 to 58973097 18395 + protein coding gene tripartite motif-containing 17
2310058D17Rik 11 58965748 to 58978050 12302 - unclassified non-coding RNA gene RIKEN cDNA 2310058D17 gene
D11Mit369 11 58969991 to 58970113 122 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-369
Gm39828 11 58972450 to 58977210 4760 - lncRNA gene predicted gene, 39828
Tssr101774 11 58974601 to 58974628 27 + TSS region transcription start site region 101774
Tssr101775 11 58974660 to 58974668 8 + TSS region transcription start site region 101775
Cpgi2946 11 58977089 to 58979104 2015 CpG island CpG island 2946
Tssr101776 11 58977578 to 58977612 34 + TSS region transcription start site region 101776
Tssr108184 11 58978010 to 58978065 55 - TSS region transcription start site region 108184
Trim11 11 58978093 to 58991458 13365 + protein coding gene tripartite motif-containing 11
Tssr101777 11 58978093 to 58978149 56 + TSS region transcription start site region 101777
Tssr101778 11 58978410 to 58978421 11 + TSS region transcription start site region 101778
Cpgi2947 11 58981998 to 58982165 167 CpG island CpG island 2947
Tssr101779 11 58982120 to 58982141 21 + TSS region transcription start site region 101779
Tssr101780 11 58982162 to 58982189 27 + TSS region transcription start site region 101780
Tssr108185 11 58991740 to 58991765 25 - TSS region transcription start site region 108185
Cpgi2948 11 58994244 to 58994804 560 CpG island CpG island 2948
Obscn 11 58994256 to 59136375 142119 - protein coding gene obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
Tssr108186 11 58999220 to 58999237 17 - TSS region transcription start site region 108186
Tssr108187 11 58999238 to 58999281 43 - TSS region transcription start site region 108187
Tssr101781 11 58999359 to 58999370 11 + TSS region transcription start site region 101781
Tssr108188 11 58999362 to 58999407 45 - TSS region transcription start site region 108188
Tssr108189 11 59002182 to 59002193 11 - TSS region transcription start site region 108189
Tssr108190 11 59002198 to 59002231 33 - TSS region transcription start site region 108190
Tssr108191 11 59002355 to 59002366 11 - TSS region transcription start site region 108191
Tssr108192 11 59002374 to 59002385 11 - TSS region transcription start site region 108192
Tssr108193 11 59002391 to 59002401 10 - TSS region transcription start site region 108193
Tssr108194 11 59002421 to 59002449 28 - TSS region transcription start site region 108194
Gm10435 11 59002910 to 59007293 4383 + antisense lncRNA gene predicted gene 10435
Tssr101782 11 59002920 to 59002950 30 + TSS region transcription start site region 101782
Tssr101783 11 59002957 to 59002969 12 + TSS region transcription start site region 101783
Tssr101784 11 59002974 to 59002981 7 + TSS region transcription start site region 101784
Cpgi2949 11 59044818 to 59045092 274 CpG island CpG island 2949
Tssr108195 11 59084247 to 59084250 3 - TSS region transcription start site region 108195
Tssr101785 11 59116459 to 59116460 1 + TSS region transcription start site region 101785
Tssr108196 11 59120925 to 59120962 37 - TSS region transcription start site region 108196