Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:58874323-58954496

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2810021J22Rik 11 58867216 to 58883288 16072 + protein coding gene RIKEN cDNA 2810021J22 gene
Tssr101756 11 58884042 to 58884074 32 + TSS region transcription start site region 101756
Tssr101757 11 58884089 to 58884098 9 + TSS region transcription start site region 101757
Tssr101758 11 58884101 to 58884113 12 + TSS region transcription start site region 101758
Zfp39 11 58888153 to 58904225 16072 - protein coding gene zinc finger protein 39
Tssr108174 11 58889298 to 58889301 3 - TSS region transcription start site region 108174
Gm12256 11 58889710 to 58891548 1838 + antisense lncRNA gene predicted gene 12256
Tssr108175 11 58889713 to 58889726 13 - TSS region transcription start site region 108175
Tssr101759 11 58893703 to 58893710 7 + TSS region transcription start site region 101759
Cpgi2937 11 58903766 to 58904439 673 CpG island CpG island 2937
Tssr108176 11 58904145 to 58904157 12 - TSS region transcription start site region 108176
Tssr108177 11 58904158 to 58904168 10 - TSS region transcription start site region 108177
Tssr108178 11 58904173 to 58904217 44 - TSS region transcription start site region 108178
Tssr108179 11 58904219 to 58904236 17 - TSS region transcription start site region 108179
Gm12257 11 58904402 to 58906170 1768 + antisense lncRNA gene predicted gene 12257
Cpgi2938 11 58914323 to 58914496 173 CpG island CpG island 2938
Btnl10 11 58917877 to 58926965 9088 + protein coding gene butyrophilin-like 10
Tssr101760 11 58917889 to 58917915 26 + TSS region transcription start site region 101760
Tssr101761 11 58917946 to 58917962 16 + TSS region transcription start site region 101761
Tssr101762 11 58917973 to 58918002 29 + TSS region transcription start site region 101762
Tssr101763 11 58918004 to 58918015 11 + TSS region transcription start site region 101763
Tssr101764 11 58926188 to 58926200 12 + TSS region transcription start site region 101764
Tssr108180 11 58928480 to 58928491 11 - TSS region transcription start site region 108180
Rnf187 11 58932288 to 58938906 6618 - protein coding gene ring finger protein 187
Tssr108181 11 58933256 to 58933295 39 - TSS region transcription start site region 108181
Cpgi2939 11 58938072 to 58939230 1158 CpG island CpG island 2939
Tssr108182 11 58938851 to 58938923 72 - TSS region transcription start site region 108182
Cpgi2940 11 58948171 to 58949370 1199 CpG island CpG island 2940
Tssr101765 11 58948890 to 58948920 30 + TSS region transcription start site region 101765
Hist3h2ba 11 58948911 to 58949372 461 + protein coding gene histone cluster 3, H2ba
Cpgi2941 11 58953762 to 58954282 520 CpG island CpG island 2941
Hist3h2bb-ps 11 58954048 to 58954512 464 - pseudogene histone cluster 3, H2bb, pseudogene
Cpgi2942 11 58954359 to 58955420 1061 CpG island CpG island 2942
Tssr108183 11 58954441 to 58954459 18 - TSS region transcription start site region 108183