Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:56051559-57971587

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12239 11 55970355 to 56098599 128244 + antisense lncRNA gene predicted gene 12239
Tssr101627 11 56072910 to 56072918 8 + TSS region transcription start site region 101627
Gm46260 11 56106459 to 56119893 13434 - lncRNA gene predicted gene, 46260
Cpgi2904 11 56117279 to 56117489 210 CpG island CpG island 2904
D11Mit131 11 56155514 to 56155663 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 131
Gm12240 11 56262855 to 56263083 228 - pseudogene predicted gene 12240
Gm24253 11 56263165 to 56263240 75 - snoRNA gene predicted gene, 24253
Tssr108108 11 56269952 to 56269963 11 - TSS region transcription start site region 108108
D11Mit313 11 56285046 to 56285167 121 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 313
Gm32500 11 56386988 to 56425531 38543 - lncRNA gene predicted gene, 32500
Cpgi2905 11 56459262 to 56459461 199 CpG island CpG island 2905
Gm12241 11 56459349 to 56460074 725 + pseudogene predicted gene 12241
Tssr108109 11 56459359 to 56459373 14 - TSS region transcription start site region 108109
Gm22603 11 56482949 to 56483044 95 + snoRNA gene predicted gene, 22603
Gm32649 11 56619118 to 56623571 4453 - lncRNA gene predicted gene, 32649
Gm46261 11 56625709 to 56665284 39575 - lncRNA gene predicted gene, 46261
D11Mit142 11 56684724 to 56684873 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 142
Gm39826 11 56719507 to 56726642 7135 - lncRNA gene predicted gene, 39826
D11Mit274 11 56741660 to 56741773 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 274
D11Dcr13 11 56934669 to 56934764 95 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 13
D11Mit164 11 56973201 to 56973332 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 164
Tssr101628 11 57011559 to 57011587 28 + TSS region transcription start site region 101628
Gria1 11 57011571 to 57330244 318673 + protein coding gene glutamate receptor, ionotropic, AMPA1 (alpha 1)
Tssr101629 11 57011707 to 57011718 11 + TSS region transcription start site region 101629
Tssr101630 11 57011724 to 57011735 11 + TSS region transcription start site region 101630
Tssr101631 11 57011743 to 57011782 39 + TSS region transcription start site region 101631
Tssr101632 11 57011798 to 57011827 29 + TSS region transcription start site region 101632
Tssr101633 11 57011832 to 57011843 11 + TSS region transcription start site region 101633
Tssr101634 11 57011945 to 57011946 1 + TSS region transcription start site region 101634
Tssr101635 11 57012747 to 57012785 38 + TSS region transcription start site region 101635
Tssr108110 11 57112423 to 57112458 35 - TSS region transcription start site region 108110
Tssr101636 11 57128903 to 57128920 17 + TSS region transcription start site region 101636
Tssr108111 11 57199389 to 57199392 3 - TSS region transcription start site region 108111
Gm12242 11 57449107 to 57449844 737 + pseudogene predicted gene 12242
Tssr108112 11 57481783 to 57481787 4 - TSS region transcription start site region 108112
Fam114a2 11 57482993 to 57518617 35624 - protein coding gene family with sequence similarity 114, member A2
Tssr108113 11 57507041 to 57507052 11 - TSS region transcription start site region 108113
Tssr108114 11 57507102 to 57507106 4 - TSS region transcription start site region 108114
Tssr108115 11 57507110 to 57507115 5 - TSS region transcription start site region 108115
Tssr108116 11 57507129 to 57507134 5 - TSS region transcription start site region 108116
Tssr3505 11 57513856 to 57513857 1 - TSS region transcription start site region 3505
Cpgi2906 11 57518044 to 57519037 993 CpG island CpG island 2906
Tssr101637 11 57518241 to 57518249 8 + TSS region transcription start site region 101637
Tssr108117 11 57518596 to 57518655 59 - TSS region transcription start site region 108117
Tssr101638 11 57518657 to 57518722 65 + TSS region transcription start site region 101638
Mfap3 11 57518664 to 57533815 15151 + protein coding gene microfibrillar-associated protein 3
Gm12243 11 57572512 to 57574595 2083 + lincRNA gene predicted gene 12243
4930486A15Rik 11 57601576 to 57602671 1095 unclassified gene RIKEN cDNA 4930486A15 gene
4933424L21Rik 11 57623698 to 57649494 25796 - antisense lncRNA gene RIKEN cDNA 4933424L21 gene
Tssr101639 11 57644590 to 57644617 27 + TSS region transcription start site region 101639
Cpgi2907 11 57644619 to 57646030 1411 CpG island CpG island 2907
Tssr101640 11 57645417 to 57645489 72 + TSS region transcription start site region 101640
Galnt10 11 57645442 to 57787501 142059 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 10
Tssr108118 11 57649465 to 57649498 33 - TSS region transcription start site region 108118
Tssr101641 11 57649568 to 57649571 3 + TSS region transcription start site region 101641
4933426K07Rik 11 57655415 to 57657826 2411 - antisense lncRNA gene RIKEN cDNA 4933426K07 gene
Tssr108119 11 57657805 to 57657839 34 - TSS region transcription start site region 108119
5830435N06Rik 11 57665726 to 57667169 1443 unclassified gene RIKEN cDNA 5830435N06 gene
Gm46282 11 57706093 to 57710163 4070 + lncRNA gene predicted gene, 46282
Tssr101642 11 57708976 to 57708997 21 + TSS region transcription start site region 101642
Tssr101643 11 57717311 to 57717314 3 + TSS region transcription start site region 101643
Gm24582 11 57741300 to 57741402 102 + snRNA gene predicted gene, 24582
n-R5s69 11 57764427 to 57764545 118 + rRNA gene nuclear encoded rRNA 5S 69
2010001A14Rik 11 57795499 to 57801417 5918 - lncRNA gene RIKEN cDNA 2010001A14 gene
Cpgi2908 11 57800700 to 57802833 2133 CpG island CpG island 2908
Tssr108120 11 57801411 to 57801432 21 - TSS region transcription start site region 108120
Tssr108121 11 57801436 to 57801453 17 - TSS region transcription start site region 108121
Tssr108122 11 57801459 to 57801487 28 - TSS region transcription start site region 108122
Tssr101644 11 57801575 to 57801649 74 + TSS region transcription start site region 101644
Sap30l 11 57801637 to 57810217 8580 + protein coding gene SAP30-like
Tssr101645 11 57807330 to 57807332 2 + TSS region transcription start site region 101645
Cpgi2909 11 57825040 to 57825240 200 CpG island CpG island 2909
Cpgi2910 11 57827530 to 57828360 830 CpG island CpG island 2910
Hand1 11 57828713 to 57832147 3434 - protein coding gene heart and neural crest derivatives expressed 1
Tssr108123 11 57828956 to 57828963 7 - TSS region transcription start site region 108123
Tssr108124 11 57829017 to 57829020 3 - TSS region transcription start site region 108124
Tssr108125 11 57829049 to 57829065 16 - TSS region transcription start site region 108125
Cpgi2911 11 57829073 to 57829742 669 CpG island CpG island 2911
Tssr108126 11 57829235 to 57829246 11 - TSS region transcription start site region 108126
Tssr3506 11 57829270 to 57829271 1 - TSS region transcription start site region 3506
Tssr108127 11 57829308 to 57829313 5 - TSS region transcription start site region 108127
Tssr108128 11 57829315 to 57829325 10 - TSS region transcription start site region 108128
Tssr108129 11 57829446 to 57829460 14 - TSS region transcription start site region 108129
Cpgi2912 11 57831235 to 57832019 784 CpG island CpG island 2912
Tssr101646 11 57831686 to 57831689 3 + TSS region transcription start site region 101646
Tssr101647 11 57831694 to 57831703 9 + TSS region transcription start site region 101647
Tssr101648 11 57831707 to 57831720 13 + TSS region transcription start site region 101648
Tssr108130 11 57831763 to 57831766 3 - TSS region transcription start site region 108130
Tssr108131 11 57832004 to 57832021 17 - TSS region transcription start site region 108131
Tssr108132 11 57832084 to 57832095 11 - TSS region transcription start site region 108132
Tssr108133 11 57832142 to 57832147 5 - TSS region transcription start site region 108133
Tssr108134 11 57832679 to 57832690 11 - TSS region transcription start site region 108134
Cpgi2913 11 57832682 to 57832968 286 CpG island CpG island 2913
Cpgi2914 11 57833524 to 57833966 442 CpG island CpG island 2914
Cpgi2915 11 57836975 to 57837266 291 CpG island CpG island 2915
Gm32915 11 57839064 to 57841678 2614 + lncRNA gene predicted gene, 32915
Gm33026 11 57856987 to 57869386 12399 - lncRNA gene predicted gene, 33026
Gm12244 11 57880896 to 57881186 290 + pseudogene predicted gene 12244
Gm33078 11 57911741 to 57923298 11557 + lncRNA gene predicted gene, 33078
D11Mit143 11 57914737 to 57914828 91 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 143
Gm12245 11 57948729 to 57949085 356 - pseudogene predicted gene 12245
Cpgi2916 11 57962395 to 57963034 639 CpG island CpG island 2916
Tssr3507 11 57963657 to 57963682 25 - TSS region transcription start site region 3507
Gm26025 11 57969342 to 57969612 270 + unclassified non-coding RNA gene predicted gene, 26025
Gm12249 11 57970244 to 57973134 2890 - lincRNA gene predicted gene 12249
Tmc1m2 11 114267131 to 56973201 -57293930 QTL Tmc1 modifier 2