Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:55402051-56682223

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(11Sparc-Gpx3)91Anjm 11 54902854 to 55420080 517226 cytogenetic marker deletion, Chr 11, Andrew N J McKenzie
Sparc 11 55394159 to 55420080 25921 - protein coding gene secreted acidic cysteine rich glycoprotein
Tssr108081 11 55404508 to 55404533 25 - TSS region transcription start site region 108081
Tssr108082 11 55405211 to 55405283 72 - TSS region transcription start site region 108082
Tssr101619 11 55405238 to 55405265 27 + TSS region transcription start site region 101619
Tssr108083 11 55405297 to 55405312 15 - TSS region transcription start site region 108083
Tssr101620 11 55406546 to 55406558 12 + TSS region transcription start site region 101620
Tssr108084 11 55406578 to 55406608 30 - TSS region transcription start site region 108084
Tssr108085 11 55409960 to 55410008 48 - TSS region transcription start site region 108085
Tssr108086 11 55410009 to 55410022 13 - TSS region transcription start site region 108086
Tssr108087 11 55410207 to 55410212 5 - TSS region transcription start site region 108087
Tssr101621 11 55417224 to 55417232 8 + TSS region transcription start site region 101621
Tssr108088 11 55419843 to 55419855 12 - TSS region transcription start site region 108088
Tssr108089 11 55419859 to 55419874 15 - TSS region transcription start site region 108089
Tssr108090 11 55419904 to 55419915 11 - TSS region transcription start site region 108090
D11Mit312 11 55422875 to 55422995 120 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 312
Atox1 11 55446643 to 55461138 14495 - protein coding gene antioxidant 1 copper chaperone
Cpgi2900 11 55460758 to 55461439 681 CpG island CpG island 2900
Tssr108091 11 55461131 to 55461156 25 - TSS region transcription start site region 108091
Tssr108092 11 55461166 to 55461177 11 - TSS region transcription start site region 108092
Tssr108093 11 55461179 to 55461190 11 - TSS region transcription start site region 108093
Gm12235 11 55463840 to 55464009 169 - pseudogene predicted gene 12235
Cpgi2901 11 55468841 to 55470446 1605 CpG island CpG island 2901
Tssr108094 11 55469145 to 55469185 40 - TSS region transcription start site region 108094
Tssr101622 11 55469648 to 55469659 11 + TSS region transcription start site region 101622
Tssr101623 11 55469677 to 55469716 39 + TSS region transcription start site region 101623
Tssr101624 11 55469724 to 55469742 18 + TSS region transcription start site region 101624
G3bp1 11 55469752 to 55500888 31136 + protein coding gene GTPase activating protein (SH3 domain) binding protein 1
Tssr101625 11 55470165 to 55470181 16 + TSS region transcription start site region 101625
Gm22884 11 55482694 to 55482833 139 + snoRNA gene predicted gene, 22884
Gm12238 11 55482706 to 55482829 123 + sense intronic lncRNA gene predicted gene 12238
Tssr101626 11 55496567 to 55496574 7 + TSS region transcription start site region 101626
Mir7652 11 55501226 to 55501281 55 + miRNA gene microRNA 7652
Glra1 11 55514239 to 55608198 93959 - protein coding gene glycine receptor, alpha 1 subunit
Gm12236 11 55514846 to 55527715 12869 + antisense lncRNA gene predicted gene 12236
Gm12237 11 55554940 to 55555409 469 + pseudogene predicted gene 12237
Cpgi2902 11 55607765 to 55608445 680 CpG island CpG island 2902
Tssr108095 11 55607819 to 55607822 3 - TSS region transcription start site region 108095
Tssr108096 11 55607900 to 55607912 12 - TSS region transcription start site region 108096
Tssr108097 11 55607917 to 55608004 87 - TSS region transcription start site region 108097
Tssr108098 11 55608189 to 55608204 15 - TSS region transcription start site region 108098
Tssr108099 11 55608210 to 55608217 7 - TSS region transcription start site region 108099
Tssr108100 11 55608281 to 55608295 14 - TSS region transcription start site region 108100
Tssr108101 11 55608547 to 55608559 12 - TSS region transcription start site region 108101
Tssr108102 11 55608563 to 55608596 33 - TSS region transcription start site region 108102
Tssr108103 11 55608597 to 55608613 16 - TSS region transcription start site region 108103
Tssr108104 11 55608622 to 55608627 5 - TSS region transcription start site region 108104
Tssr108105 11 55608629 to 55608663 34 - TSS region transcription start site region 108105
Tssr108106 11 55659130 to 55659133 3 - TSS region transcription start site region 108106
Tssr3504 11 55678210 to 55678211 1 + TSS region transcription start site region 3504
Gm45963 11 55781368 to 55963249 181881 + lncRNA gene predicted gene, 45963
D11Mit349 11 55789348 to 55789465 117 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 349
D11Mit272 11 55828082 to 55828203 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 272
D11Dcr12 11 55889987 to 55890090 103 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 12
Gm12239 11 55970355 to 56098599 128244 + antisense lncRNA gene predicted gene 12239
Nmur2 11 56024990 to 56040987 15997 - protein coding gene neuromedin U receptor 2
Cpgi2903 11 56040423 to 56040607 184 CpG island CpG island 2903
Tssr108107 11 56040985 to 56041023 38 - TSS region transcription start site region 108107
D11Mit64 11 56042051 to 56042223 172 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 64
Tssr101627 11 56072910 to 56072918 8 + TSS region transcription start site region 101627
Gm46260 11 56106459 to 56119893 13434 - lncRNA gene predicted gene, 46260
Cpgi2904 11 56117279 to 56117489 210 CpG island CpG island 2904
D11Mit131 11 56155514 to 56155663 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 131
Gm12240 11 56262855 to 56263083 228 - pseudogene predicted gene 12240
Gm24253 11 56263165 to 56263240 75 - snoRNA gene predicted gene, 24253
Tssr108108 11 56269952 to 56269963 11 - TSS region transcription start site region 108108
D11Mit313 11 56285046 to 56285167 121 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 313
Gm32500 11 56386988 to 56425531 38543 - lncRNA gene predicted gene, 32500
Cpgi2905 11 56459262 to 56459461 199 CpG island CpG island 2905
Gm12241 11 56459349 to 56460074 725 + pseudogene predicted gene 12241
Tssr108109 11 56459359 to 56459373 14 - TSS region transcription start site region 108109
Gm22603 11 56482949 to 56483044 95 + snoRNA gene predicted gene, 22603
Gm32649 11 56619118 to 56623571 4453 - lncRNA gene predicted gene, 32649
Gm46261 11 56625709 to 56665284 39575 - lncRNA gene predicted gene, 46261