Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:54910397-55310417

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tnip1 11 54910785 to 54962917 52132 - protein coding gene TNFAIP3 interacting protein 1
Tssr108024 11 54916951 to 54916966 15 - TSS region transcription start site region 108024
Tssr108025 11 54917888 to 54917900 12 - TSS region transcription start site region 108025
Tssr108026 11 54918651 to 54918683 32 - TSS region transcription start site region 108026
Gm12230 11 54947435 to 54947888 453 + pseudogene predicted gene 12230
Tssr108027 11 54952422 to 54952428 6 - TSS region transcription start site region 108027
Cpgi2894 11 54955592 to 54956391 799 CpG island CpG island 2894
Tssr101579 11 54955817 to 54955839 22 + TSS region transcription start site region 101579
Tssr108028 11 54956033 to 54956040 7 - TSS region transcription start site region 108028
Tssr108029 11 54956049 to 54956115 66 - TSS region transcription start site region 108029
Tssr101580 11 54956195 to 54956202 7 + TSS region transcription start site region 101580
Tssr101581 11 54956224 to 54956240 16 + TSS region transcription start site region 101581
Tssr101582 11 54958660 to 54958664 4 + TSS region transcription start site region 101582
Tssr101583 11 54960533 to 54960552 19 + TSS region transcription start site region 101583
Tssr101584 11 54960561 to 54960573 12 + TSS region transcription start site region 101584
Tssr101585 11 54961702 to 54961709 7 + TSS region transcription start site region 101585
Tssr101586 11 54961737 to 54961756 19 + TSS region transcription start site region 101586
Tssr108030 11 54962873 to 54962874 1 - TSS region transcription start site region 108030
Tssr108031 11 54962903 to 54962953 50 - TSS region transcription start site region 108031
Tssr108032 11 54971952 to 54971954 2 - TSS region transcription start site region 108032
Tssr108033 11 54973771 to 54973801 30 - TSS region transcription start site region 108033
Anxa6 11 54979108 to 55033445 54337 - protein coding gene annexin A6
Tssr108034 11 54982744 to 54982749 5 - TSS region transcription start site region 108034
Tssr108035 11 54985164 to 54985178 14 - TSS region transcription start site region 108035
Gm19911 11 55019932 to 55028866 8934 + lncRNA gene predicted gene, 19911
Tssr108036 11 55021815 to 55021863 48 - TSS region transcription start site region 108036
Cpgi2895 11 55033113 to 55033608 495 CpG island CpG island 2895
Tssr108037 11 55033398 to 55033461 63 - TSS region transcription start site region 108037
Ccdc69 11 55049731 to 55078131 28400 - protein coding gene coiled-coil domain containing 69
Cpgi2896 11 55077509 to 55078381 872 CpG island CpG island 2896
Tssr108038 11 55078075 to 55078119 44 - TSS region transcription start site region 108038
Tssr108039 11 55078120 to 55078145 25 - TSS region transcription start site region 108039
Cpgi2897 11 55097458 to 55098609 1151 CpG island CpG island 2897
Tssr101587 11 55097968 to 55097979 11 + TSS region transcription start site region 101587
Tssr101588 11 55098042 to 55098102 60 + TSS region transcription start site region 101588
Tssr101589 11 55098104 to 55098129 25 + TSS region transcription start site region 101589
Gm2a 11 55098115 to 55113029 14914 + protein coding gene GM2 ganglioside activator protein
Tssr101590 11 55098132 to 55098150 18 + TSS region transcription start site region 101590
Tssr101591 11 55103544 to 55103562 18 + TSS region transcription start site region 101591
Tssr101592 11 55103708 to 55103724 16 + TSS region transcription start site region 101592
Tssr101593 11 55109013 to 55109056 43 + TSS region transcription start site region 101593
Tssr101594 11 55109372 to 55109383 11 + TSS region transcription start site region 101594
Tssr108040 11 55109417 to 55109445 28 - TSS region transcription start site region 108040
Tssr101595 11 55109613 to 55109622 9 + TSS region transcription start site region 101595
Tssr101596 11 55109640 to 55109642 2 + TSS region transcription start site region 101596
Tssr108041 11 55109666 to 55109691 25 - TSS region transcription start site region 108041
Tssr101597 11 55109705 to 55109716 11 + TSS region transcription start site region 101597
Tssr108042 11 55109724 to 55109751 27 - TSS region transcription start site region 108042
Tssr101598 11 55109807 to 55109826 19 + TSS region transcription start site region 101598
Tssr101599 11 55109835 to 55109846 11 + TSS region transcription start site region 101599
Tssr101600 11 55110090 to 55110097 7 + TSS region transcription start site region 101600
Tssr101601 11 55110167 to 55110172 5 + TSS region transcription start site region 101601
Tssr101602 11 55110212 to 55110217 5 + TSS region transcription start site region 101602
Tssr101603 11 55110302 to 55110329 27 + TSS region transcription start site region 101603
Tssr101604 11 55110337 to 55110356 19 + TSS region transcription start site region 101604
Tssr101605 11 55110397 to 55110417 20 + TSS region transcription start site region 101605
Gm12231 11 55118101 to 55118795 694 - pseudogene predicted gene 12231
Tssr108043 11 55118850 to 55118888 38 - TSS region transcription start site region 108043
D11Dcr11 11 55120012 to 55120110 98 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 11
Mup-ps22 11 55123695 to 55123937 242 + pseudogene major urinary protein, pseudogene 22
Tssr101606 11 55123799 to 55123810 11 + TSS region transcription start site region 101606
Tssr101607 11 55123926 to 55123949 23 + TSS region transcription start site region 101607
Tssr108044 11 55123963 to 55123981 18 - TSS region transcription start site region 108044
Slc36a3 11 55124815 to 55151708 26893 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 3
D11Mit207 11 55125289 to 55125383 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 207
Nwa3 11 55125289 to 55125383 94 QTL New Zealand White autoimmunity 3
Tssr101608 11 55131656 to 55131704 48 + TSS region transcription start site region 101608
Tssr101609 11 55136991 to 55137019 28 + TSS region transcription start site region 101609
Tssr101610 11 55137023 to 55137033 10 + TSS region transcription start site region 101610
Slc36a3os 11 55137044 to 55140193 3149 + antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 3, opposite strand
Tssr108045 11 55147188 to 55147210 22 - TSS region transcription start site region 108045
Gm31688 11 55149964 to 55158365 8401 + lncRNA gene predicted gene, 31688
Tssr108046 11 55151679 to 55151691 12 - TSS region transcription start site region 108046
Tssr108047 11 55151698 to 55151699 1 - TSS region transcription start site region 108047
Tssr108048 11 55151703 to 55151712 9 - TSS region transcription start site region 108048
Slc36a2 11 55158470 to 55185077 26607 - protein coding gene solute carrier family 36 (proton/amino acid symporter), member 2
Tssr108049 11 55185029 to 55185082 53 - TSS region transcription start site region 108049
Slc36a1os 11 55191719 to 55197682 5963 - antisense lncRNA gene solute carrier family 36 (proton/amino acid symporter), member 1, opposite strand
Cpgi2898 11 55204157 to 55204986 829 CpG island CpG island 2898
Tssr101611 11 55204319 to 55204386 67 + TSS region transcription start site region 101611
Slc36a1 11 55204350 to 55236330 31980 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 1
Tssr101612 11 55204396 to 55204412 16 + TSS region transcription start site region 101612
Tssr101613 11 55213783 to 55213814 31 + TSS region transcription start site region 101613
Tssr101614 11 55217709 to 55217732 23 + TSS region transcription start site region 101614
Fat2 11 55250609 to 55336564 85955 - protein coding gene FAT atypical cadherin 2
Cpgi2899 11 55262417 to 55262808 391 CpG island CpG island 2899
Tssr108050 11 55310089 to 55310100 11 - TSS region transcription start site region 108050