Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:54021581-54181590

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc22a4 11 53983123 to 54028090 44967 - protein coding gene solute carrier family 22 (organic cation transporter), member 4
Cpgi2882 11 54027519 to 54028867 1348 CpG island CpG island 2882
Tssr107970 11 54027739 to 54027746 7 - TSS region transcription start site region 107970
Tssr107971 11 54028096 to 54028111 15 - TSS region transcription start site region 107971
Tssr107972 11 54028137 to 54028148 11 - TSS region transcription start site region 107972
Tssr107973 11 54028611 to 54028630 19 - TSS region transcription start site region 107973
Tssr107974 11 54028711 to 54028721 10 - TSS region transcription start site region 107974
Tssr107975 11 54028789 to 54028803 14 - TSS region transcription start site region 107975
Pdlim4 11 54054928 to 54069014 14086 - protein coding gene PDZ and LIM domain 4
Cpgi2883 11 54068509 to 54069458 949 CpG island CpG island 2883
Tssr107976 11 54068950 to 54069017 67 - TSS region transcription start site region 107976
Tssr107977 11 54069213 to 54069256 43 - TSS region transcription start site region 107977
Tssr101466 11 54080597 to 54080601 4 + TSS region transcription start site region 101466
Tssr101467 11 54082999 to 54083011 12 + TSS region transcription start site region 101467
Cpgi2884 11 54100132 to 54101451 1319 CpG island CpG island 2884
P4ha2 11 54100924 to 54131668 30744 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
Tssr101468 11 54100969 to 54101025 56 + TSS region transcription start site region 101468
Tssr101469 11 54101034 to 54101043 9 + TSS region transcription start site region 101469
Tssr101470 11 54101228 to 54101275 47 + TSS region transcription start site region 101470
Tssr101471 11 54101581 to 54101590 9 + TSS region transcription start site region 101471
Tssr101472 11 54124416 to 54124420 4 + TSS region transcription start site region 101472
Tssr101473 11 54124506 to 54124520 14 + TSS region transcription start site region 101473
Tssr101474 11 54141797 to 54141804 7 + TSS region transcription start site region 101474
Tssr3499 11 54141869 to 54141872 3 + TSS region transcription start site region 3499
Tssr101475 11 54141909 to 54141927 18 + TSS region transcription start site region 101475
Gm18323 11 54153990 to 54154697 707 - pseudogene predicted gene, 18323
Gm12221 11 54158926 to 54160056 1130 + pseudogene predicted gene 12221
Spqq1 11 54174844 to 63428696 9253852 QTL sperm quality QTL 1
D11Mit310 11 54174844 to 54174968 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 310
Blmpf2 11 54174844 to 67187585 13012741 QTL bleomycin-induced pulmonary fibrosis 2
4933405E24Rik 11 54177772 to 54213285 35513 - lincRNA gene RIKEN cDNA 4933405E24 gene