Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:53722107-53822127

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
Il5 11 53720794 to 53725103 4309 + protein coding gene interleukin 5
D11Nds9 11 53722738 to 53723028 290 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 9
Tria1 11 53722738 to 53723028 290 QTL T cell receptor induced activation 1
Tssr101439 11 53723732 to 53723747 15 + TSS region transcription start site region 101439
Tssr101440 11 53723768 to 53723790 22 + TSS region transcription start site region 101440
Tssr101441 11 53723938 to 53723955 17 + TSS region transcription start site region 101441
Gm12214 11 53723953 to 53724618 665 - antisense lncRNA gene predicted gene 12214
Tssr101442 11 53723995 to 53724024 29 + TSS region transcription start site region 101442
Tssr101443 11 53724099 to 53724111 12 + TSS region transcription start site region 101443
Tssr107951 11 53724348 to 53724357 9 - TSS region transcription start site region 107951
Tssr107952 11 53724390 to 53724409 19 - TSS region transcription start site region 107952
Tssr101444 11 53724497 to 53724508 11 + TSS region transcription start site region 101444
Tssr107953 11 53724509 to 53724528 19 - TSS region transcription start site region 107953
Tssr101445 11 53724585 to 53724599 14 + TSS region transcription start site region 101445
Tssr101446 11 53724618 to 53724639 21 + TSS region transcription start site region 101446
Tssr101447 11 53724654 to 53724655 1 + TSS region transcription start site region 101447
Gm12213 11 53733579 to 53733931 352 + pseudogene predicted gene 12213
Cpgi2875 11 53735572 to 53736040 468 CpG island CpG island 2875
Tssr101448 11 53752968 to 53752973 5 + TSS region transcription start site region 101448
Cpgi2876 11 53762935 to 53764195 1260 CpG island CpG island 2876
Mir7671 11 53763597 to 53763654 57 - miRNA gene microRNA 7671
Tssr107954 11 53763681 to 53763693 12 - TSS region transcription start site region 107954
Tssr101449 11 53763820 to 53763856 36 + TSS region transcription start site region 101449
Tssr107955 11 53763906 to 53763916 10 - TSS region transcription start site region 107955
Tssr107956 11 53763960 to 53763974 14 - TSS region transcription start site region 107956
Cpgi2877 11 53769637 to 53770898 1261 CpG island CpG island 2877
Tssr107957 11 53769747 to 53769780 33 - TSS region transcription start site region 107957
Del(11Irf1-D11Mit23)1Rub 11 53770014 to 54236047 466033 cytogenetic marker deletion, Chr 11, Edward M Rubin 1
Irf1 11 53770014 to 53778374 8360 + protein coding gene interferon regulatory factor 1
Tssr101450 11 53770042 to 53770057 15 + TSS region transcription start site region 101450
Tssr101451 11 53770458 to 53770505 47 + TSS region transcription start site region 101451
Tssr101452 11 53770806 to 53770823 17 + TSS region transcription start site region 101452
Tssr101453 11 53770977 to 53770980 3 + TSS region transcription start site region 101453
Tssr101454 11 53771267 to 53771277 10 + TSS region transcription start site region 101454
Tssr101455 11 53771372 to 53771388 16 + TSS region transcription start site region 101455
Tssr101456 11 53771710 to 53771722 12 + TSS region transcription start site region 101456
Tssr101457 11 53771757 to 53771768 11 + TSS region transcription start site region 101457
Tssr101458 11 53772070 to 53772087 17 + TSS region transcription start site region 101458
Tssr101459 11 53772107 to 53772127 20 + TSS region transcription start site region 101459
Gm17334 11 53772281 to 53773187 906 - protein coding gene predicted gene, 17334
Tssr101460 11 53785488 to 53785491 3 + TSS region transcription start site region 101460
Gm12216 11 53785489 to 53859256 73767 - protein coding gene predicted gene 12216
Tssr101461 11 53786817 to 53786821 4 + TSS region transcription start site region 101461
Tssr101462 11 53805005 to 53805008 3 + TSS region transcription start site region 101462
Tssr107958 11 53805149 to 53805159 10 - TSS region transcription start site region 107958
Tssr107959 11 53818732 to 53818740 8 - TSS region transcription start site region 107959