Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:52375424-53345426

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vdac1 11 52360862 to 52389397 28535 + protein coding gene voltage-dependent anion channel 1
Tssr101360 11 52389139 to 52389146 7 + TSS region transcription start site region 101360
Tssr107895 11 52390049 to 52390082 33 - TSS region transcription start site region 107895
Cpgi2856 11 52396267 to 52397167 900 CpG island CpG island 2856
Tssr101361 11 52396390 to 52396395 5 + TSS region transcription start site region 101361
Tssr101362 11 52396414 to 52396449 35 + TSS region transcription start site region 101362
9530068E07Rik 11 52396428 to 52408723 12295 + protein coding gene RIKEN cDNA 9530068E07 gene
Tssr101363 11 52396451 to 52396473 22 + TSS region transcription start site region 101363
Tssr101364 11 52396482 to 52396494 12 + TSS region transcription start site region 101364
Tssr101365 11 52396540 to 52396543 3 + TSS region transcription start site region 101365
Tssr101366 11 52396585 to 52396601 16 + TSS region transcription start site region 101366
Tssr101367 11 52402911 to 52402932 21 + TSS region transcription start site region 101367
Tssr107896 11 52403368 to 52403390 22 - TSS region transcription start site region 107896
Tssr101368 11 52403441 to 52403481 40 + TSS region transcription start site region 101368
Tssr101369 11 52405255 to 52405262 7 + TSS region transcription start site region 101369
Gm12208 11 52405316 to 52405478 162 + pseudogene predicted gene 12208
Tssr101370 11 52407171 to 52407185 14 + TSS region transcription start site region 101370
Tssr101371 11 52407402 to 52407454 52 + TSS region transcription start site region 101371
Gm12209 11 52478508 to 52479103 595 - pseudogene predicted gene 12209
Cpgi2857 11 52480784 to 52481066 282 CpG island CpG island 2857
Tssr107897 11 52480916 to 52480923 7 - TSS region transcription start site region 107897
Gm12210 11 52487158 to 52487310 152 - pseudogene predicted gene 12210
Tssr101372 11 52569218 to 52569219 1 + TSS region transcription start site region 101372
Gm30366 11 52579322 to 52663853 84531 + lncRNA gene predicted gene, 30366
Gm39823 11 52705779 to 52707045 1266 + lncRNA gene predicted gene, 39823
Cpgi2858 11 52764249 to 52766205 1956 CpG island CpG island 2858
Fstl4 11 52764634 to 53188538 423904 + protein coding gene follistatin-like 4
Tssr101373 11 52764651 to 52764693 42 + TSS region transcription start site region 101373
Tssr101374 11 52816367 to 52816370 3 + TSS region transcription start site region 101374
Tssr101375 11 52820214 to 52820216 2 + TSS region transcription start site region 101375
Tssr101376 11 52860424 to 52860426 2 + TSS region transcription start site region 101376
Tssr107898 11 52997396 to 52997418 22 - TSS region transcription start site region 107898
Gm39824 11 53036474 to 53042619 6145 - lncRNA gene predicted gene, 39824
D11Mit311 11 53077240 to 53077356 116 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 311
Gm11186 11 53111451 to 53120056 8605 - antisense lncRNA gene predicted gene 11186
D11Mit273 11 53143826 to 53143949 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 273
D11Mit141 11 53143833 to 53143981 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 141
Tssr101377 11 53187606 to 53187611 5 + TSS region transcription start site region 101377
Gm11189 11 53200684 to 53201058 374 + pseudogene predicted gene 11189
D11Mit240 11 53228937 to 53229086 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 240
Tssr107899 11 53255631 to 53255637 6 - TSS region transcription start site region 107899
Tssr107900 11 53257707 to 53257715 8 - TSS region transcription start site region 107900
Tssr107901 11 53257716 to 53257741 25 - TSS region transcription start site region 107901
Tssr107902 11 53257742 to 53257758 16 - TSS region transcription start site region 107902
Hspa4 11 53259814 to 53300457 40643 - protein coding gene heat shock protein 4
Tssr107903 11 53265999 to 53266035 36 - TSS region transcription start site region 107903
Tssr107904 11 53266041 to 53266054 13 - TSS region transcription start site region 107904
Tssr107905 11 53266988 to 53267016 28 - TSS region transcription start site region 107905
Tssr101378 11 53267045 to 53267065 20 + TSS region transcription start site region 101378
Tssr107906 11 53269776 to 53269815 39 - TSS region transcription start site region 107906
Tssr107907 11 53271075 to 53271088 13 - TSS region transcription start site region 107907
Cpgi2859 11 53299593 to 53301059 1466 CpG island CpG island 2859
Tssr101379 11 53299855 to 53299872 17 + TSS region transcription start site region 101379
Tssr101380 11 53299884 to 53299895 11 + TSS region transcription start site region 101380
Tssr107908 11 53300177 to 53300179 2 - TSS region transcription start site region 107908
Tssr107909 11 53300187 to 53300198 11 - TSS region transcription start site region 107909
Tssr107910 11 53300199 to 53300221 22 - TSS region transcription start site region 107910
Tssr107911 11 53300332 to 53300341 9 - TSS region transcription start site region 107911
Tssr107912 11 53300373 to 53300515 142 - TSS region transcription start site region 107912
Tssr107913 11 53300530 to 53300540 10 - TSS region transcription start site region 107913
Tssr107914 11 53300686 to 53300704 18 - TSS region transcription start site region 107914
Tssr101381 11 53300806 to 53300832 26 + TSS region transcription start site region 101381
Gm30525 11 53302627 to 53308551 5924 - lncRNA gene predicted gene, 30525
Tssr107915 11 53307628 to 53307640 12 - TSS region transcription start site region 107915
Tssr107916 11 53307654 to 53307658 4 - TSS region transcription start site region 107916
Tssr3494 11 53315059 to 53315068 9 + TSS region transcription start site region 3494
Tssr107917 11 53324590 to 53324612 22 - TSS region transcription start site region 107917
Cpgi2860 11 53324591 to 53324928 337 CpG island CpG island 2860
Tssr101382 11 53324674 to 53324704 30 + TSS region transcription start site region 101382
Zcchc10 11 53324689 to 53333301 8612 + protein coding gene zinc finger, CCHC domain containing 10
Tssr101383 11 53330574 to 53330609 35 + TSS region transcription start site region 101383
Tssr101384 11 53330612 to 53330619 7 + TSS region transcription start site region 101384
Tssr101385 11 53332155 to 53332171 16 + TSS region transcription start site region 101385
Tssr101386 11 53332186 to 53332207 21 + TSS region transcription start site region 101386
Tssr101387 11 53332383 to 53332394 11 + TSS region transcription start site region 101387
Tssr101388 11 53332467 to 53332481 14 + TSS region transcription start site region 101388
Tssr101389 11 53332485 to 53332515 30 + TSS region transcription start site region 101389
Tssr101390 11 53332529 to 53332541 12 + TSS region transcription start site region 101390
Gm11188 11 53345290 to 53345677 387 - pseudogene predicted gene 11188