Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:52006746-52246836

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdkl3 11 52004221 to 52089784 85563 + protein coding gene cyclin-dependent kinase-like 3
Gm12205 11 52038850 to 52039471 621 - antisense lncRNA gene predicted gene 12205
D11Mit154 11 52048521 to 52048633 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 154
Gm2769 11 52097305 to 52098824 1519 protein coding gene predicted gene 2769
Cpgi2848 11 52098124 to 52099731 1607 CpG island CpG island 2848
Tssr107845 11 52098515 to 52098533 18 - TSS region transcription start site region 107845
Tssr101308 11 52098785 to 52098796 11 + TSS region transcription start site region 101308
Tssr101309 11 52098802 to 52098813 11 + TSS region transcription start site region 101309
Tssr101310 11 52098815 to 52098842 27 + TSS region transcription start site region 101310
Ppp2ca 11 52098824 to 52122749 23925 + protein coding gene protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
Tssr101311 11 52098852 to 52098875 23 + TSS region transcription start site region 101311
Gm24157 11 52099043 to 52099153 110 - miRNA gene predicted gene, 24157
Tssr107846 11 52099711 to 52099739 28 - TSS region transcription start site region 107846
Gm30631 11 52116311 to 52117008 697 - pseudogene predicted gene, 30631
Tssr101312 11 52117997 to 52118010 13 + TSS region transcription start site region 101312
Tssr101313 11 52120914 to 52120921 7 + TSS region transcription start site region 101313
Tssr107847 11 52120960 to 52120975 15 - TSS region transcription start site region 107847
Tssr101314 11 52121902 to 52121957 55 + TSS region transcription start site region 101314
Tssr101315 11 52122263 to 52122279 16 + TSS region transcription start site region 101315
Tssr101316 11 52122417 to 52122432 15 + TSS region transcription start site region 101316
9430098F02Rik 11 52124530 to 52127779 3249 - lincRNA gene RIKEN cDNA 9430098F02 gene
Mir3061 11 52126746 to 52126836 90 + miRNA gene microRNA 3061
Olfr1373 11 52144593 to 52145528 935 - protein coding gene olfactory receptor 1373
Olfr1372-ps1 11 52154876 to 52157907 3031 - pseudogene olfactory receptor 1372, pseudogene 1
Cpgi2849 11 52167144 to 52168440 1296 CpG island CpG island 2849
Tssr107848 11 52168117 to 52168137 20 - TSS region transcription start site region 107848
Cpgi2850 11 52187096 to 52187418 322 CpG island CpG island 2850
Gm12206 11 52188953 to 52189553 600 + pseudogene predicted gene 12206
Olfr1371 11 52213052 to 52213987 935 - protein coding gene olfactory receptor 1371
Cpgi2851 11 52224135 to 52224496 361 CpG island CpG island 2851
Tssr101317 11 52224315 to 52224356 41 + TSS region transcription start site region 101317
Tssr3490 11 52224620 to 52224641 21 + TSS region transcription start site region 3490
Tssr101318 11 52224672 to 52224683 11 + TSS region transcription start site region 101318
Tssr3491 11 52230872 to 52230884 12 + TSS region transcription start site region 3491
Cpgi2852 11 52231697 to 52232623 926 CpG island CpG island 2852
Tssr107849 11 52231884 to 52231897 13 - TSS region transcription start site region 107849
Skp1a 11 52231995 to 52246858 14863 + protein coding gene S-phase kinase-associated protein 1A
Tssr101319 11 52232028 to 52232041 13 + TSS region transcription start site region 101319
Tssr101320 11 52232175 to 52232180 5 + TSS region transcription start site region 101320
Tssr101321 11 52232183 to 52232228 45 + TSS region transcription start site region 101321
Tssr101322 11 52232237 to 52232256 19 + TSS region transcription start site region 101322
Tssr101323 11 52232264 to 52232286 22 + TSS region transcription start site region 101323
Tssr101324 11 52232306 to 52232315 9 + TSS region transcription start site region 101324
Gm12207 11 52233724 to 52236619 2895 + antisense lncRNA gene predicted gene 12207
D11Pjn4 11 52236615 to 52236770 155 DNA segment DNA segment, Chr 11, Patsy J. Nishina 4
Tssr3492 11 52241793 to 52241797 4 + TSS region transcription start site region 3492
Tssr101325 11 52246187 to 52246208 21 + TSS region transcription start site region 101325
Tssr101326 11 52246551 to 52246559 8 + TSS region transcription start site region 101326