Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:51874990-55565004

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839 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae44b 11 40059901 to 54203622 14143721 QTL experimental allergic encephalomyelitis susceptibility 44b
Vmbic10 11 42881799 to 54190238 11308439 QTL ventral midbrain iron content 10
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
Tssr107834 11 51874997 to 51875000 3 - TSS region transcription start site region 107834
Tssr101292 11 51876085 to 51876110 25 + TSS region transcription start site region 101292
Tssr101293 11 51884007 to 51884014 7 + TSS region transcription start site region 101293
Gm39821 11 51884029 to 51889041 5012 + lncRNA gene predicted gene, 39821
Tssr101294 11 51884073 to 51884121 48 + TSS region transcription start site region 101294
Tssr101295 11 51884139 to 51884147 8 + TSS region transcription start site region 101295
Tssr101296 11 51884265 to 51884284 19 + TSS region transcription start site region 101296
Gm46281 11 51889060 to 51890280 1220 + lncRNA gene predicted gene, 46281
Gm39822 11 51898966 to 51909624 10658 + lincRNA gene predicted gene, 39822
Tssr101297 11 51915661 to 51915664 3 + TSS region transcription start site region 101297
Tssr101298 11 51915766 to 51915774 8 + TSS region transcription start site region 101298
Tssr101299 11 51916906 to 51916919 13 + TSS region transcription start site region 101299
Tssr107835 11 51931855 to 51931870 15 - TSS region transcription start site region 107835
Gm26551 11 51949882 to 52269514 319632 - lincRNA gene predicted gene, 26551
Tssr107836 11 51950086 to 51950122 36 - TSS region transcription start site region 107836
Tssr101300 11 51961345 to 51961352 7 + TSS region transcription start site region 101300
Gm26061 11 51964382 to 51964489 107 + snRNA gene predicted gene, 26061
Cpgi2845 11 51967228 to 51968297 1069 CpG island CpG island 2845
Tssr101301 11 51967649 to 51967709 60 + TSS region transcription start site region 101301
Cdkn2aipnl 11 51967661 to 51977334 9673 + protein coding gene CDKN2A interacting protein N-terminal like
n-TAagc1 11 51976539 to 51976610 71 + tRNA gene nuclear encoded tRNA alanine 1 (anticodon AGC)
Ube2b 11 51985497 to 52000762 15265 - protein coding gene ubiquitin-conjugating enzyme E2B
5430406J06Rik 11 51993571 to 51994503 932 unclassified gene RIKEN cDNA 5430406J06 gene
Tssr107837 11 51997847 to 51997878 31 - TSS region transcription start site region 107837
Tssr107838 11 51998897 to 51998903 6 - TSS region transcription start site region 107838
Cpgi2846 11 51999731 to 52000944 1213 CpG island CpG island 2846
Tssr107839 11 52000356 to 52000388 32 - TSS region transcription start site region 107839
Tssr107840 11 52000410 to 52000428 18 - TSS region transcription start site region 107840
Tssr107841 11 52000432 to 52000475 43 - TSS region transcription start site region 107841
Tssr107842 11 52000721 to 52000744 23 - TSS region transcription start site region 107842
Tssr107843 11 52000748 to 52000775 27 - TSS region transcription start site region 107843
Tssr107844 11 52000780 to 52000794 14 - TSS region transcription start site region 107844
Gm12204 11 52000853 to 52001911 1058 + antisense lncRNA gene predicted gene 12204
Tssr101302 11 52000912 to 52000928 16 + TSS region transcription start site region 101302
Tssr101303 11 52000931 to 52000948 17 + TSS region transcription start site region 101303
Cpgi2847 11 52004052 to 52004568 516 CpG island CpG island 2847
Tssr101304 11 52004191 to 52004217 26 + TSS region transcription start site region 101304
Tssr101305 11 52004220 to 52004311 91 + TSS region transcription start site region 101305
Cdkl3 11 52004221 to 52089784 85563 + protein coding gene cyclin-dependent kinase-like 3
Tssr101306 11 52004313 to 52004335 22 + TSS region transcription start site region 101306
Tssr101307 11 52004340 to 52004366 26 + TSS region transcription start site region 101307
Gm12205 11 52038850 to 52039471 621 - antisense lncRNA gene predicted gene 12205
D11Mit154 11 52048521 to 52048633 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 154
Gm2769 11 52097305 to 52098824 1519 protein coding gene predicted gene 2769
Cpgi2848 11 52098124 to 52099731 1607 CpG island CpG island 2848
Tssr107845 11 52098515 to 52098533 18 - TSS region transcription start site region 107845
Tssr101308 11 52098785 to 52098796 11 + TSS region transcription start site region 101308
Tssr101309 11 52098802 to 52098813 11 + TSS region transcription start site region 101309
Tssr101310 11 52098815 to 52098842 27 + TSS region transcription start site region 101310
Ppp2ca 11 52098824 to 52122749 23925 + protein coding gene protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
Tssr101311 11 52098852 to 52098875 23 + TSS region transcription start site region 101311
Gm24157 11 52099043 to 52099153 110 - miRNA gene predicted gene, 24157
Tssr107846 11 52099711 to 52099739 28 - TSS region transcription start site region 107846
Gm30631 11 52116311 to 52117008 697 - pseudogene predicted gene, 30631
Tssr101312 11 52117997 to 52118010 13 + TSS region transcription start site region 101312
Tssr101313 11 52120914 to 52120921 7 + TSS region transcription start site region 101313
Tssr107847 11 52120960 to 52120975 15 - TSS region transcription start site region 107847
Tssr101314 11 52121902 to 52121957 55 + TSS region transcription start site region 101314
Tssr101315 11 52122263 to 52122279 16 + TSS region transcription start site region 101315
Tssr101316 11 52122417 to 52122432 15 + TSS region transcription start site region 101316
9430098F02Rik 11 52124530 to 52127779 3249 - lincRNA gene RIKEN cDNA 9430098F02 gene
Mir3061 11 52126746 to 52126836 90 + miRNA gene microRNA 3061
Olfr1373 11 52144593 to 52145528 935 - protein coding gene olfactory receptor 1373
Olfr1372-ps1 11 52154876 to 52157907 3031 - pseudogene olfactory receptor 1372, pseudogene 1
Cpgi2849 11 52167144 to 52168440 1296 CpG island CpG island 2849
Tssr107848 11 52168117 to 52168137 20 - TSS region transcription start site region 107848
Cpgi2850 11 52187096 to 52187418 322 CpG island CpG island 2850
Gm12206 11 52188953 to 52189553 600 + pseudogene predicted gene 12206
Olfr1371 11 52213052 to 52213987 935 - protein coding gene olfactory receptor 1371
Cpgi2851 11 52224135 to 52224496 361 CpG island CpG island 2851
Tssr101317 11 52224315 to 52224356 41 + TSS region transcription start site region 101317
Tssr3490 11 52224620 to 52224641 21 + TSS region transcription start site region 3490
Tssr101318 11 52224672 to 52224683 11 + TSS region transcription start site region 101318
Tssr3491 11 52230872 to 52230884 12 + TSS region transcription start site region 3491
Cpgi2852 11 52231697 to 52232623 926 CpG island CpG island 2852
Tssr107849 11 52231884 to 52231897 13 - TSS region transcription start site region 107849
Skp1a 11 52231995 to 52246858 14863 + protein coding gene S-phase kinase-associated protein 1A
Tssr101319 11 52232028 to 52232041 13 + TSS region transcription start site region 101319
Tssr101320 11 52232175 to 52232180 5 + TSS region transcription start site region 101320
Tssr101321 11 52232183 to 52232228 45 + TSS region transcription start site region 101321
Tssr101322 11 52232237 to 52232256 19 + TSS region transcription start site region 101322
Tssr101323 11 52232264 to 52232286 22 + TSS region transcription start site region 101323
Tssr101324 11 52232306 to 52232315 9 + TSS region transcription start site region 101324
Gm12207 11 52233724 to 52236619 2895 + antisense lncRNA gene predicted gene 12207
D11Pjn4 11 52236615 to 52236770 155 DNA segment DNA segment, Chr 11, Patsy J. Nishina 4
Tssr3492 11 52241793 to 52241797 4 + TSS region transcription start site region 3492
Tssr101325 11 52246187 to 52246208 21 + TSS region transcription start site region 101325
Tssr101326 11 52246551 to 52246559 8 + TSS region transcription start site region 101326
Tcf7 11 52252371 to 52283014 30643 - protein coding gene transcription factor 7, T cell specific
Tssr107850 11 52252654 to 52252669 15 - TSS region transcription start site region 107850
Tssr107851 11 52252886 to 52252901 15 - TSS region transcription start site region 107851
Tssr107852 11 52253482 to 52253493 11 - TSS region transcription start site region 107852
Tssr101327 11 52253661 to 52253698 37 + TSS region transcription start site region 101327
Tssr101328 11 52253712 to 52253758 46 + TSS region transcription start site region 101328
Tssr107853 11 52253719 to 52253750 31 - TSS region transcription start site region 107853
Tssr107854 11 52253822 to 52253836 14 - TSS region transcription start site region 107854
Tssr107855 11 52253859 to 52253890 31 - TSS region transcription start site region 107855
Tssr3493 11 52253871 to 52253885 14 + TSS region transcription start site region 3493
Tssr107856 11 52253903 to 52253932 29 - TSS region transcription start site region 107856
Tssr101329 11 52256251 to 52256283 32 + TSS region transcription start site region 101329
Tssr107857 11 52256836 to 52256856 20 - TSS region transcription start site region 107857
Tssr107858 11 52256976 to 52256998 22 - TSS region transcription start site region 107858
Tssr107859 11 52257000 to 52257025 25 - TSS region transcription start site region 107859
Tssr107860 11 52257061 to 52257087 26 - TSS region transcription start site region 107860
Tssr107861 11 52257724 to 52257781 57 - TSS region transcription start site region 107861
Tssr107862 11 52257793 to 52257809 16 - TSS region transcription start site region 107862
Tssr107863 11 52258888 to 52258899 11 - TSS region transcription start site region 107863
Tssr107864 11 52260593 to 52260625 32 - TSS region transcription start site region 107864
Tssr101330 11 52261505 to 52261531 26 + TSS region transcription start site region 101330
Tssr101331 11 52261537 to 52261564 27 + TSS region transcription start site region 101331
Tssr107865 11 52261542 to 52261565 23 - TSS region transcription start site region 107865
Tssr107866 11 52261575 to 52261600 25 - TSS region transcription start site region 107866
Tssr107867 11 52263801 to 52263810 9 - TSS region transcription start site region 107867
Tssr107868 11 52264785 to 52264804 19 - TSS region transcription start site region 107868
Tssr107869 11 52264972 to 52265018 46 - TSS region transcription start site region 107869
Tssr101332 11 52265746 to 52265752 6 + TSS region transcription start site region 101332
Tssr107870 11 52271453 to 52271471 18 - TSS region transcription start site region 107870
Tssr107871 11 52274841 to 52274897 56 - TSS region transcription start site region 107871
Tssr107872 11 52275522 to 52275533 11 - TSS region transcription start site region 107872
Tssr101333 11 52275611 to 52275662 51 + TSS region transcription start site region 101333
A630014C17Rik 11 52276055 to 52286179 10124 + antisense lncRNA gene RIKEN cDNA A630014C17 gene
Tssr107873 11 52277148 to 52277164 16 - TSS region transcription start site region 107873
Tssr107874 11 52277360 to 52277371 11 - TSS region transcription start site region 107874
Tssr107875 11 52279071 to 52279111 40 - TSS region transcription start site region 107875
Tssr101334 11 52280001 to 52280033 32 + TSS region transcription start site region 101334
Tssr107876 11 52280207 to 52280221 14 - TSS region transcription start site region 107876
Tssr107877 11 52280239 to 52280249 10 - TSS region transcription start site region 107877
Tssr107878 11 52281776 to 52281784 8 - TSS region transcription start site region 107878
Tssr107879 11 52281833 to 52281866 33 - TSS region transcription start site region 107879
Tssr107880 11 52282295 to 52282307 12 - TSS region transcription start site region 107880
Tssr107881 11 52282319 to 52282334 15 - TSS region transcription start site region 107881
Cpgi2853 11 52282375 to 52284594 2219 CpG island CpG island 2853
Tssr107882 11 52282564 to 52282579 15 - TSS region transcription start site region 107882
Tssr101335 11 52282688 to 52282705 17 + TSS region transcription start site region 101335
Tssr107883 11 52282758 to 52282772 14 - TSS region transcription start site region 107883
Tssr107884 11 52282803 to 52282826 23 - TSS region transcription start site region 107884
Tssr107885 11 52283230 to 52283239 9 - TSS region transcription start site region 107885
Tssr107886 11 52283248 to 52283270 22 - TSS region transcription start site region 107886
Tssr107887 11 52283302 to 52283394 92 - TSS region transcription start site region 107887
Tssr107888 11 52284392 to 52284417 25 - TSS region transcription start site region 107888
Tssr101336 11 52299807 to 52299819 12 + TSS region transcription start site region 101336
Tssr101337 11 52300076 to 52300084 8 + TSS region transcription start site region 101337
Tssr107889 11 52306613 to 52306624 11 - TSS region transcription start site region 107889
Tssr107890 11 52306711 to 52306723 12 - TSS region transcription start site region 107890
Tssr101338 11 52306763 to 52306776 13 + TSS region transcription start site region 101338
Tssr101339 11 52306782 to 52306793 11 + TSS region transcription start site region 101339
Tssr101340 11 52306972 to 52306988 16 + TSS region transcription start site region 101340
Gm30217 11 52307118 to 52318720 11602 + lncRNA gene predicted gene, 30217
Tssr101341 11 52307626 to 52307639 13 + TSS region transcription start site region 101341
Tssr101342 11 52307774 to 52307792 18 + TSS region transcription start site region 101342
Tssr101343 11 52307797 to 52307806 9 + TSS region transcription start site region 101343
Tssr101344 11 52307807 to 52307822 15 + TSS region transcription start site region 101344
Tssr101345 11 52307860 to 52307863 3 + TSS region transcription start site region 101345
Tssr101346 11 52307926 to 52307937 11 + TSS region transcription start site region 101346
Tssr101347 11 52309507 to 52309533 26 + TSS region transcription start site region 101347
Tssr101348 11 52309663 to 52309672 9 + TSS region transcription start site region 101348
Tssr101349 11 52310989 to 52310998 9 + TSS region transcription start site region 101349
Tssr101350 11 52311003 to 52311022 19 + TSS region transcription start site region 101350
Tssr101351 11 52311025 to 52311048 23 + TSS region transcription start site region 101351
Tssr101352 11 52311165 to 52311194 29 + TSS region transcription start site region 101352
Cpgi2854 11 52314166 to 52314444 278 CpG island CpG island 2854
Tssr101353 11 52318759 to 52318770 11 + TSS region transcription start site region 101353
Tssr107891 11 52332557 to 52332568 11 - TSS region transcription start site region 107891
Tssr107892 11 52336079 to 52336094 15 - TSS region transcription start site region 107892
Tssr101354 11 52336258 to 52336267 9 + TSS region transcription start site region 101354
Tssr101355 11 52339763 to 52339772 9 + TSS region transcription start site region 101355
D11Mit87 11 52343766 to 52343904 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 87
Cpgi2855 11 52360329 to 52361961 1632 CpG island CpG island 2855
Tssr101356 11 52360824 to 52360935 111 + TSS region transcription start site region 101356
Vdac1 11 52360862 to 52389397 28535 + protein coding gene voltage-dependent anion channel 1
Tssr107893 11 52360939 to 52360955 16 - TSS region transcription start site region 107893
Tssr107894 11 52360963 to 52361013 50 - TSS region transcription start site region 107894
Tssr101357 11 52361049 to 52361064 15 + TSS region transcription start site region 101357
Tssr101358 11 52361069 to 52361126 57 + TSS region transcription start site region 101358
Tssr101359 11 52374294 to 52374320 26 + TSS region transcription start site region 101359
Tssr101360 11 52389139 to 52389146 7 + TSS region transcription start site region 101360
Tssr107895 11 52390049 to 52390082 33 - TSS region transcription start site region 107895
Cpgi2856 11 52396267 to 52397167 900 CpG island CpG island 2856
Tssr101361 11 52396390 to 52396395 5 + TSS region transcription start site region 101361
Tssr101362 11 52396414 to 52396449 35 + TSS region transcription start site region 101362
9530068E07Rik 11 52396428 to 52408723 12295 + protein coding gene RIKEN cDNA 9530068E07 gene
Tssr101363 11 52396451 to 52396473 22 + TSS region transcription start site region 101363
Tssr101364 11 52396482 to 52396494 12 + TSS region transcription start site region 101364
Tssr101365 11 52396540 to 52396543 3 + TSS region transcription start site region 101365
Tssr101366 11 52396585 to 52396601 16 + TSS region transcription start site region 101366
Tssr101367 11 52402911 to 52402932 21 + TSS region transcription start site region 101367
Tssr107896 11 52403368 to 52403390 22 - TSS region transcription start site region 107896
Tssr101368 11 52403441 to 52403481 40 + TSS region transcription start site region 101368
Tssr101369 11 52405255 to 52405262 7 + TSS region transcription start site region 101369
Gm12208 11 52405316 to 52405478 162 + pseudogene predicted gene 12208
Tssr101370 11 52407171 to 52407185 14 + TSS region transcription start site region 101370
Tssr101371 11 52407402 to 52407454 52 + TSS region transcription start site region 101371
Gm12209 11 52478508 to 52479103 595 - pseudogene predicted gene 12209
Cpgi2857 11 52480784 to 52481066 282 CpG island CpG island 2857
Tssr107897 11 52480916 to 52480923 7 - TSS region transcription start site region 107897
Gm12210 11 52487158 to 52487310 152 - pseudogene predicted gene 12210
Tssr101372 11 52569218 to 52569219 1 + TSS region transcription start site region 101372