Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:120124487-120424624

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc38a10 11 120103960 to 120151346 47386 - protein coding gene solute carrier family 38, member 10
Tssr112266 11 120136698 to 120136707 9 - TSS region transcription start site region 112266
Tssr112267 11 120139407 to 120139422 15 - TSS region transcription start site region 112267
Tssr112268 11 120139427 to 120139432 5 - TSS region transcription start site region 112268
Tssr112269 11 120139436 to 120139448 12 - TSS region transcription start site region 112269
Tssr112270 11 120139449 to 120139451 2 - TSS region transcription start site region 112270
Tssr112271 11 120139495 to 120139496 1 - TSS region transcription start site region 112271
Tssr112272 11 120142890 to 120142891 1 - TSS region transcription start site region 112272
Tssr106269 11 120145128 to 120145130 2 + TSS region transcription start site region 106269
D11Mit293 11 120149142 to 120149254 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 293
Tssr106270 11 120150528 to 120150567 39 + TSS region transcription start site region 106270
Cpgi4288 11 120150544 to 120151561 1017 CpG island CpG island 4288
Gm11769 11 120150562 to 120152341 1779 + lncRNA gene predicted gene 11769
Tssr112273 11 120151194 to 120151354 160 - TSS region transcription start site region 112273
Gm39486 11 120157590 to 120164239 6649 - lncRNA gene predicted gene, 39486
Tssr112274 11 120164657 to 120164659 2 - TSS region transcription start site region 112274
Tssr106271 11 120164774 to 120164792 18 + TSS region transcription start site region 106271
Gm9734 11 120183640 to 120186828 3188 + unclassified gene predicted gene 9734
Cpgi4289 11 120185344 to 120186143 799 CpG island CpG island 4289
2810410L24Rik 11 120186650 to 120189856 3206 - lncRNA gene RIKEN cDNA 2810410L24 gene
Cpgi4290 11 120188116 to 120188355 239 CpG island CpG island 4290
Cpgi4291 11 120189212 to 120190282 1070 CpG island CpG island 4291
Tssr112275 11 120189863 to 120189939 76 - TSS region transcription start site region 112275
Gm11770 11 120215082 to 120216993 1911 - antisense lncRNA gene predicted gene 11770
Tssr112276 11 120216631 to 120216642 11 - TSS region transcription start site region 112276
Tssr106272 11 120217239 to 120217247 8 + TSS region transcription start site region 106272
2900052L18Rik 11 120229802 to 120231585 1783 - lncRNA gene RIKEN cDNA 2900052L18 gene
Cpgi4292 11 120230063 to 120230514 451 CpG island CpG island 4292
Tssr106273 11 120230075 to 120230098 23 + TSS region transcription start site region 106273
Cpgi4293 11 120230517 to 120231763 1246 CpG island CpG island 4293
Tssr112277 11 120231465 to 120231477 12 - TSS region transcription start site region 112277
Tssr112278 11 120231517 to 120231541 24 - TSS region transcription start site region 112278
Tssr112279 11 120231578 to 120231607 29 - TSS region transcription start site region 112279
Tssr112280 11 120231628 to 120231639 11 - TSS region transcription start site region 112280
Cpgi4294 11 120232607 to 120233042 435 CpG island CpG island 4294
Tssr106274 11 120232902 to 120232918 16 + TSS region transcription start site region 106274
Tssr106275 11 120232921 to 120232952 31 + TSS region transcription start site region 106275
Bahcc1 11 120232947 to 120292296 59349 + protein coding gene BAH domain and coiled-coil containing 1
Tssr106276 11 120232958 to 120232980 22 + TSS region transcription start site region 106276
Cpgi4295 11 120233392 to 120235157 1765 CpG island CpG island 4295
Tssr106277 11 120233928 to 120233975 47 + TSS region transcription start site region 106277
Tssr112281 11 120235073 to 120235080 7 - TSS region transcription start site region 112281
Gm11772 11 120235234 to 120236122 888 - antisense lncRNA gene predicted gene 11772
Cpgi4296 11 120235570 to 120238168 2598 CpG island CpG island 4296
Tssr112282 11 120235868 to 120235899 31 - TSS region transcription start site region 112282
Tssr112283 11 120236052 to 120236058 6 - TSS region transcription start site region 112283
Tssr106278 11 120236493 to 120236524 31 + TSS region transcription start site region 106278
Tssr112284 11 120237309 to 120237335 26 - TSS region transcription start site region 112284
Tssr112285 11 120237356 to 120237367 11 - TSS region transcription start site region 112285
Tssr112286 11 120237600 to 120237646 46 - TSS region transcription start site region 112286
Tssr106279 11 120253044 to 120253063 19 + TSS region transcription start site region 106279
Cpgi4297 11 120261485 to 120261649 164 CpG island CpG island 4297
Gm47297 11 120274487 to 120274624 137 + miRNA gene predicted gene, 47297
Cpgi4298 11 120304847 to 120305619 772 CpG island CpG island 4298
Cpgi4299 11 120310650 to 120311456 806 CpG island CpG island 4299
Cpgi4300 11 120316327 to 120316724 397 CpG island CpG island 4300
Actg1 11 120345687 to 120348495 2808 - protein coding gene actin, gamma, cytoplasmic 1
Gm23419 11 120346736 to 120346819 83 - miRNA gene predicted gene, 23419
Mir6935 11 120347350 to 120347413 63 - miRNA gene microRNA 6935
Tssr112287 11 120347431 to 120347459 28 - TSS region transcription start site region 112287
Cpgi4301 11 120347571 to 120350616 3045 CpG island CpG island 4301
Tssr112288 11 120348179 to 120348189 10 - TSS region transcription start site region 112288
Tssr112289 11 120348204 to 120348245 41 - TSS region transcription start site region 112289
Tssr112290 11 120348495 to 120348508 13 - TSS region transcription start site region 112290
Tssr112291 11 120348513 to 120348559 46 - TSS region transcription start site region 112291
0610009L18Rik 11 120348678 to 120351190 2512 + bidirectional promoter lncRNA gene RIKEN cDNA 0610009L18 gene
Tssr106280 11 120348682 to 120348782 100 + TSS region transcription start site region 106280
Tssr112292 11 120348751 to 120348791 40 - TSS region transcription start site region 112292
Tssr3756 11 120349278 to 120349290 12 + TSS region transcription start site region 3756
Tssr112293 11 120349414 to 120349427 13 - TSS region transcription start site region 112293
Tssr112294 11 120349844 to 120349862 18 - TSS region transcription start site region 112294
Tssr3757 11 120350271 to 120350286 15 + TSS region transcription start site region 3757
Tssr106281 11 120361156 to 120361202 46 + TSS region transcription start site region 106281
Tssr106282 11 120361506 to 120361543 37 + TSS region transcription start site region 106282
Fscn2 11 120361534 to 120368168 6634 + protein coding gene fascin actin-bundling protein 2
Tssr106283 11 120366462 to 120366504 42 + TSS region transcription start site region 106283
Faap100 11 120369562 to 120378746 9184 - protein coding gene Fanconi anemia core complex associated protein 100
Cpgi4302 11 120377911 to 120379205 1294 CpG island CpG island 4302
Tssr112295 11 120378692 to 120378779 87 - TSS region transcription start site region 112295
Gm9981 11 120378800 to 120379811 1011 unclassified gene predicted gene 9981
Nploc4 11 120380370 to 120437708 57338 - protein coding gene NPL4 homolog, ubiquitin recognition factor
Tssr112296 11 120404911 to 120404918 7 - TSS region transcription start site region 112296