Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:11997422-18907551

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288 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grb10 11 11930499 to 12037422 106923 - protein coding gene growth factor receptor bound protein 10
Tssr106911 11 12004318 to 12004322 4 - TSS region transcription start site region 106911
Tssr106912 11 12009492 to 12009495 3 - TSS region transcription start site region 106912
Cpgi2586 11 12025419 to 12027039 1620 CpG island CpG island 2586
Tssr106913 11 12025849 to 12025883 34 - TSS region transcription start site region 106913
Tssr106914 11 12026237 to 12026249 12 - TSS region transcription start site region 106914
Tssr106915 11 12026772 to 12026823 51 - TSS region transcription start site region 106915
Tssr106916 11 12027958 to 12027973 15 - TSS region transcription start site region 106916
Tssr106917 11 12028908 to 12028911 3 - TSS region transcription start site region 106917
Tssr3430 11 12035990 to 12036008 18 - TSS region transcription start site region 3430
Cpgi2587 11 12036330 to 12038138 1808 CpG island CpG island 2587
Tssr106918 11 12037349 to 12037360 11 - TSS region transcription start site region 106918
Tssr106919 11 12037391 to 12037407 16 - TSS region transcription start site region 106919
Tssr100394 11 12037644 to 12037659 15 + TSS region transcription start site region 100394
Gm30423 11 12040686 to 12047122 6436 - lncRNA gene predicted gene, 30423
Tssr100395 11 12053934 to 12053938 4 + TSS region transcription start site region 100395
Gm24036 11 12054148 to 12054303 155 - snRNA gene predicted gene, 24036
Tssr106920 11 12054299 to 12054307 8 - TSS region transcription start site region 106920
Gm12001 11 12125090 to 12127998 2908 - pseudogene predicted gene 12001
Cobl 11 12236676 to 12464960 228284 - protein coding gene cordon-bleu WH2 repeat
Gm39581 11 12242309 to 12263293 20984 + lncRNA gene predicted gene, 39581
Tssr106921 11 12309732 to 12309746 14 - TSS region transcription start site region 106921
Tssr106922 11 12309760 to 12309771 11 - TSS region transcription start site region 106922
Gm12002 11 12313365 to 12346088 32723 + antisense lncRNA gene predicted gene 12002
Tssr100396 11 12314509 to 12314529 20 + TSS region transcription start site region 100396
Lmrq4 11 12318637 to 69794121 57475484 QTL Leishmania major resistance QTL 4
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
Eae44 11 12318637 to 40060013 27741376 QTL experimental allergic encephalomyelitis susceptibility 44
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
D11Mit2 11 12318637 to 12318743 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 2
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
Tssr106923 11 12354027 to 12354032 5 - TSS region transcription start site region 106923
Gm30596 11 12379434 to 12388976 9542 + lncRNA gene predicted gene, 30596
Tssr106924 11 12412136 to 12412153 17 - TSS region transcription start site region 106924
Tssr106925 11 12428969 to 12428991 22 - TSS region transcription start site region 106925
Tssr106926 11 12429015 to 12429028 13 - TSS region transcription start site region 106926
Cpgi2588 11 12464272 to 12465562 1290 CpG island CpG island 2588
Tssr106927 11 12464746 to 12464759 13 - TSS region transcription start site region 106927
Tssr106928 11 12464819 to 12464845 26 - TSS region transcription start site region 106928
Tssr106929 11 12464850 to 12464879 29 - TSS region transcription start site region 106929
Tssr106930 11 12464881 to 12464997 116 - TSS region transcription start site region 106930
Gm19314 11 12557219 to 12557644 425 - pseudogene predicted gene, 19314
Tssr106931 11 12557809 to 12557822 13 - TSS region transcription start site region 106931
D11Mit204 11 12610927 to 12611067 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 204
Gm22156 11 12676933 to 12677073 140 + snoRNA gene predicted gene, 22156
D11Mit150 11 12692718 to 12692908 190 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 150
Gm22789 11 12692813 to 12692942 129 + snoRNA gene predicted gene, 22789
Gm12003 11 12936834 to 12937938 1104 - pseudogene predicted gene 12003
Gm12004 11 12997666 to 12998380 714 + pseudogene predicted gene 12004
D11Mit133 11 13452477 to 13452616 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 133
Gm30770 11 13941722 to 13955732 14010 - lncRNA gene predicted gene, 30770
4930554G24Rik 11 14072103 to 14179041 106938 - lincRNA gene RIKEN cDNA 4930554G24 gene
Tssr106932 11 14120419 to 14120425 6 - TSS region transcription start site region 106932
Tssr106933 11 14147704 to 14147712 8 - TSS region transcription start site region 106933
Tssr100397 11 14162055 to 14162066 11 + TSS region transcription start site region 100397
Gm12005 11 14162079 to 14162457 378 + pseudogene predicted gene 12005
Tssr106934 11 14179040 to 14179081 41 - TSS region transcription start site region 106934
Tssr100398 11 14186129 to 14186133 4 + TSS region transcription start site region 100398
Tssr106935 11 14448655 to 14448659 4 - TSS region transcription start site region 106935
Gm12006 11 14487613 to 14488015 402 + pseudogene predicted gene 12006
1700046C09Rik 11 14560355 to 14599225 38870 - lincRNA gene RIKEN cDNA 1700046C09 gene
Tssr106936 11 14599194 to 14599207 13 - TSS region transcription start site region 106936
Tssr100399 11 14599240 to 14599243 3 + TSS region transcription start site region 100399
Tssr100400 11 14599252 to 14599296 44 + TSS region transcription start site region 100400
Pom121l12 11 14599276 to 14600314 1038 + protein coding gene POM121 membrane glycoprotein-like 12
Tssr3431 11 14703490 to 14703492 2 + TSS region transcription start site region 3431
Gm12007 11 14722617 to 14723213 596 + pseudogene predicted gene 12007
Gm12008 11 14780027 to 14780781 754 + pseudogene predicted gene 12008
D11Mit148 11 14802448 to 14802592 144 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 148
Gm12009 11 15049158 to 15050257 1099 + pseudogene predicted gene 12009
Gm24707 11 15412300 to 15412406 106 + snRNA gene predicted gene, 24707
Gm25490 11 15452422 to 15452551 129 + snoRNA gene predicted gene, 25490
Gm12010 11 15482327 to 15489453 7126 + pseudogene predicted gene 12010
Gm37319 11 16037793 to 16038428 635 + unclassified gene predicted gene, 37319
Gm12011 11 16236929 to 16237546 617 + pseudogene predicted gene 12011
Cpgi2589 11 16257160 to 16258100 940 CpG island CpG island 2589
Vstm2a 11 16257357 to 16284551 27194 + protein coding gene V-set and transmembrane domain containing 2A
Tssr100401 11 16257634 to 16257649 15 + TSS region transcription start site region 100401
Tssr100402 11 16257659 to 16257672 13 + TSS region transcription start site region 100402
Tssr100403 11 16257706 to 16257808 102 + TSS region transcription start site region 100403
Tssr100404 11 16257867 to 16257878 11 + TSS region transcription start site region 100404
Tssr100405 11 16260585 to 16260607 22 + TSS region transcription start site region 100405
Cpgi2590 11 16260669 to 16261470 801 CpG island CpG island 2590
Gm12012 11 16439254 to 16440319 1065 + pseudogene predicted gene 12012
Sec61g 11 16501638 to 16508484 6846 - protein coding gene SEC61, gamma subunit
Cpgi2591 11 16507759 to 16508568 809 CpG island CpG island 2591
Tssr106937 11 16508098 to 16508139 41 - TSS region transcription start site region 106937
Tssr106938 11 16508149 to 16508187 38 - TSS region transcription start site region 106938
Tssr106939 11 16508487 to 16508507 20 - TSS region transcription start site region 106939
Akt2-ps 11 16514533 to 16515981 1448 + pseudogene thymoma viral proto-oncogene 2, pseudogene
Tssr100406 11 16526107 to 16526113 6 + TSS region transcription start site region 100406
Tssr106940 11 16591511 to 16591530 19 - TSS region transcription start site region 106940
Tssr106941 11 16591668 to 16591674 6 - TSS region transcription start site region 106941
Tssr106942 11 16592894 to 16592897 3 - TSS region transcription start site region 106942
Gm12663 11 16635109 to 16636066 957 - pseudogene predicted gene 12663
Tssr106943 11 16636128 to 16636141 13 - TSS region transcription start site region 106943
Gm12664 11 16643009 to 16643921 912 - pseudogene predicted gene 12664
Gm24714 11 16645438 to 16645538 100 - miRNA gene predicted gene, 24714
D11Mit75 11 16648403 to 16648528 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 75
Gm39583 11 16687946 to 16742258 54312 - lncRNA gene predicted gene, 39583
Gm25698 11 16732605 to 16732711 106 - snRNA gene predicted gene, 25698
Tssr106944 11 16742244 to 16742280 36 - TSS region transcription start site region 106944
Cpgi2592 11 16751955 to 16753433 1478 CpG island CpG island 2592
Tssr3432 11 16752197 to 16752202 5 + TSS region transcription start site region 3432
Tssr100407 11 16752203 to 16752215 12 + TSS region transcription start site region 100407
Egfr 11 16752203 to 16913907 161704 + protein coding gene epidermal growth factor receptor
Tssr100408 11 16752220 to 16752236 16 + TSS region transcription start site region 100408
Tssr100409 11 16752245 to 16752265 20 + TSS region transcription start site region 100409
Tssr100410 11 16753320 to 16753333 13 + TSS region transcription start site region 100410
Tssr100411 11 16758911 to 16758916 5 + TSS region transcription start site region 100411
Tssr100412 11 16759513 to 16759524 11 + TSS region transcription start site region 100412
Tssr100413 11 16759586 to 16759610 24 + TSS region transcription start site region 100413
Tssr100414 11 16759613 to 16759639 26 + TSS region transcription start site region 100414
Tssr100415 11 16778000 to 16778033 33 + TSS region transcription start site region 100415
Tssr100416 11 16778146 to 16778148 2 + TSS region transcription start site region 100416
Tssr100417 11 16778600 to 16778612 12 + TSS region transcription start site region 100417
Tssr100418 11 16778653 to 16778692 39 + TSS region transcription start site region 100418
Tssr106945 11 16779551 to 16779561 10 - TSS region transcription start site region 106945
Gm39584 11 16782393 to 16793633 11240 - lncRNA gene predicted gene, 39584
Tssr100419 11 16786077 to 16786086 9 + TSS region transcription start site region 100419
Tssr106946 11 16791301 to 16791319 18 - TSS region transcription start site region 106946
Tssr100420 11 16804413 to 16804424 11 + TSS region transcription start site region 100420
Tssr100421 11 16805637 to 16805647 10 + TSS region transcription start site region 100421
Tssr100422 11 16810904 to 16810915 11 + TSS region transcription start site region 100422
Tssr100423 11 16815403 to 16815407 4 + TSS region transcription start site region 100423
Egfros 11 16815431 to 16830702 15271 - antisense lncRNA gene epidermal growth factor receptor, opposite strand
Tssr100424 11 16822827 to 16822834 7 + TSS region transcription start site region 100424
Tssr100425 11 16842410 to 16842421 11 + TSS region transcription start site region 100425
Tssr100426 11 16846324 to 16846327 3 + TSS region transcription start site region 100426
Tssr100427 11 16846354 to 16846389 35 + TSS region transcription start site region 100427
Tssr100428 11 16870455 to 16870463 8 + TSS region transcription start site region 100428
Tssr100429 11 16871017 to 16871024 7 + TSS region transcription start site region 100429
Tssr100430 11 16871800 to 16871816 16 + TSS region transcription start site region 100430
Tssr100431 11 16901830 to 16901835 5 + TSS region transcription start site region 100431
Tssr100432 11 16905341 to 16905349 8 + TSS region transcription start site region 100432
Tssr100433 11 16912447 to 16912462 15 + TSS region transcription start site region 100433
Tssr106947 11 16912726 to 16912732 6 - TSS region transcription start site region 106947
Tssr100434 11 16914240 to 16914250 10 + TSS region transcription start site region 100434
Tssr100435 11 16914597 to 16914620 23 + TSS region transcription start site region 100435
Tssr100436 11 16914739 to 16914743 4 + TSS region transcription start site region 100436
Tssr100437 11 16915225 to 16915300 75 + TSS region transcription start site region 100437
Tssr100438 11 16915356 to 16915359 3 + TSS region transcription start site region 100438
Tssr100439 11 16916065 to 16916109 44 + TSS region transcription start site region 100439
Tssr100440 11 16917215 to 16917235 20 + TSS region transcription start site region 100440
Eldr 11 16935154 to 16951282 16128 - lncRNA gene Egfr long non-coding downstream RNA
Cpgi2593 11 16951083 to 16951789 706 CpG island CpG island 2593
Tssr106948 11 16951083 to 16951131 48 - TSS region transcription start site region 106948
Tssr100441 11 16951371 to 16951417 46 + TSS region transcription start site region 100441
Fbxo48 11 16951375 to 16954772 3397 + protein coding gene F-box protein 48
Tssr100442 11 16951440 to 16951468 28 + TSS region transcription start site region 100442
6230414M07Rik 11 16958788 to 16960036 1248 unclassified gene RIKEN cDNA 6230414M07 gene
Plek 11 16971206 to 17008718 37512 - protein coding gene pleckstrin
Tssr106949 11 16972228 to 16972250 22 - TSS region transcription start site region 106949
Tssr106950 11 16972253 to 16972274 21 - TSS region transcription start site region 106950
Tssr106951 11 16972754 to 16972827 73 - TSS region transcription start site region 106951
Tssr106952 11 16972831 to 16972854 23 - TSS region transcription start site region 106952
Tssr106953 11 16972879 to 16972919 40 - TSS region transcription start site region 106953
Tssr106954 11 16972923 to 16973000 77 - TSS region transcription start site region 106954
Tssr106955 11 16973159 to 16973177 18 - TSS region transcription start site region 106955
Tssr106956 11 16973211 to 16973244 33 - TSS region transcription start site region 106956
Tssr106957 11 16973255 to 16973302 47 - TSS region transcription start site region 106957
Tssr106958 11 16973439 to 16973499 60 - TSS region transcription start site region 106958
Tssr106959 11 16973926 to 16973988 62 - TSS region transcription start site region 106959
Tssr106960 11 16974003 to 16974017 14 - TSS region transcription start site region 106960
Tssr106961 11 16974024 to 16974097 73 - TSS region transcription start site region 106961
Tssr106962 11 16974108 to 16974132 24 - TSS region transcription start site region 106962
Tssr106963 11 16981826 to 16981840 14 - TSS region transcription start site region 106963
Tssr106964 11 16981848 to 16981933 85 - TSS region transcription start site region 106964
Tssr106965 11 16983220 to 16983269 49 - TSS region transcription start site region 106965
Tssr106966 11 16984041 to 16984068 27 - TSS region transcription start site region 106966
Tssr106967 11 16985347 to 16985387 40 - TSS region transcription start site region 106967
Tssr106968 11 16990135 to 16990189 54 - TSS region transcription start site region 106968
Tssr106969 11 16992966 to 16992981 15 - TSS region transcription start site region 106969
Tssr106970 11 16994737 to 16994776 39 - TSS region transcription start site region 106970
Tssr106971 11 16995231 to 16995266 35 - TSS region transcription start site region 106971
Tssr106972 11 16995311 to 16995327 16 - TSS region transcription start site region 106972
Tssr106973 11 16995332 to 16995359 27 - TSS region transcription start site region 106973
Tssr106974 11 16999722 to 16999726 4 - TSS region transcription start site region 106974
Tssr106975 11 17000388 to 17000400 12 - TSS region transcription start site region 106975
Tssr106976 11 17002928 to 17002951 23 - TSS region transcription start site region 106976
Tssr106977 11 17008647 to 17008687 40 - TSS region transcription start site region 106977
Gm12014 11 17017867 to 17020209 2342 + pseudogene predicted gene 12014
Tssr106978 11 17044334 to 17044337 3 - TSS region transcription start site region 106978
Tssr100443 11 17051601 to 17051625 24 + TSS region transcription start site region 100443
Tssr100444 11 17051626 to 17051651 25 + TSS region transcription start site region 100444
Tssr100445 11 17051654 to 17051674 20 + TSS region transcription start site region 100445
Cpgi2594 11 17051759 to 17052385 626 CpG island CpG island 2594
Tssr100446 11 17051792 to 17051808 16 + TSS region transcription start site region 100446
Tssr100447 11 17051823 to 17051899 76 + TSS region transcription start site region 100447
Tssr100448 11 17051926 to 17051974 48 + TSS region transcription start site region 100448
Cnrip1 11 17051934 to 17079372 27438 + protein coding gene cannabinoid receptor interacting protein 1
Tssr100449 11 17051976 to 17051996 20 + TSS region transcription start site region 100449